From 7e1f3a610d68fed02e1accd576714f3871c776fa Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Sat, 26 May 2012 04:21:07 +0000 Subject: [PATCH 1/1] in progress --- .../src/org/forester/evoinference/distance/NeighborJoining.java | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java b/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java index 164599d..33f3f6e 100644 --- a/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java +++ b/forester/java/src/org/forester/evoinference/distance/NeighborJoining.java @@ -36,7 +36,7 @@ import org.forester.util.ForesterUtil; public final class NeighborJoining { private BasicSymmetricalDistanceMatrix _d; - private BasicSymmetricalDistanceMatrix _m; + // private BasicSymmetricalDistanceMatrix _m; private double[][] _d_values; private double[][] _m_values; private double[] _r; @@ -178,11 +178,10 @@ public final class NeighborJoining { private final void reset( final BasicSymmetricalDistanceMatrix distances ) { _n = distances.getSize(); _d = distances; - _m = new BasicSymmetricalDistanceMatrix( _n ); _r = new double[ _n ]; _mappings = new int[ _n ]; _d_values = _d.getValues(); - _m_values = _m.getValues(); + _m_values = new double[ _n ][ _n ]; initExternalNodes(); } -- 1.7.10.2