From 7f88b4e40175e3f47d35786ba1cb44d1ae79cce8 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 30 Aug 2006 16:09:47 +0000
Subject: [PATCH] jnet file is 1 to 1 mapping

---
 src/jalview/io/JnetAnnotationMaker.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/io/JnetAnnotationMaker.java b/src/jalview/io/JnetAnnotationMaker.java
index 60fb601..61f0ce1 100755
--- a/src/jalview/io/JnetAnnotationMaker.java
+++ b/src/jalview/io/JnetAnnotationMaker.java
@@ -111,7 +111,7 @@ public class JnetAnnotationMaker
 
         if (seqRef != null)
         {
-          annot.createSequenceMapping(seqRef, 1, false);
+          annot.createSequenceMapping(seqRef, 1, true);
           seqRef.addAlignmentAnnotation(annot);
         }
 
-- 
1.7.10.2