From 8004878db16757b62ee2c35738506bc4509428cf Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 7 Apr 2005 16:58:38 +0000
Subject: [PATCH] for now, draw selection box bottom -1

---
 src/jalview/gui/SeqCanvas.java |   27 ++++++++++++++++++++-------
 1 file changed, 20 insertions(+), 7 deletions(-)

diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java
index 5782661..caf93fc 100755
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -81,8 +81,8 @@ public void fastPaint(int horizontal, int vertical)
 
     gg.translate(transX, transY);
 
-    drawPanel(gg, sr, er, ss, es, sr, ss, 0);
 
+    drawPanel(gg, sr, er, ss, es, sr, ss, 0);
     gg.translate( -transX, -transY);
 
     fastPaint = true;
@@ -172,7 +172,6 @@ public void fastPaint(int horizontal, int vertical)
 
   public void drawPanel(Graphics g1,int x1,int x2, int y1, int y2,int startx, int starty,int offset) {
 
-
    Graphics2D g = (Graphics2D)g1;
     g.setFont(av.getFont());
     RendererI sr = av.getRenderer();
@@ -209,7 +208,7 @@ public void fastPaint(int horizontal, int vertical)
     /////////////////////////////
     for (int i = y1 ; i < y2 ;i++)
     {
-     nextSeq = av.getAlignment().getSequenceAt(i);
+     nextSeq = av.alignment.getSequenceAt(i);
 
      sr.drawSequence(g, nextSeq, av.alignment.findAllGroups( nextSeq ),x1,x2,
                  (x1 - startx) * av.charWidth,
@@ -262,7 +261,7 @@ public void fastPaint(int horizontal, int vertical)
 
             if (bottom == -1 &&
                 !group.sequences.contains(av.alignment.getSequenceAt(i + 1)))
-              bottom = sy + av.charHeight -1;
+              bottom = sy + av.charHeight ;
 
             if (!inGroup)
             {
@@ -270,6 +269,7 @@ public void fastPaint(int horizontal, int vertical)
                   !group.sequences.contains(av.alignment.getSequenceAt(i - 1)))
                 top = sy;
 
+
               oldY = sy;
               inGroup = true;
               if (group == av.getSelectionGroup())
@@ -288,13 +288,20 @@ public void fastPaint(int horizontal, int vertical)
           {
             if (inGroup)
             {
-
               g.drawLine(sx, oldY, sx, sy );
               g.drawLine(sx+ex, oldY, sx+ex, sy );
+
               if (top != -1)
+              {
                 g.drawLine(sx, top, sx + ex, top);
+                top =-1;
+              }
               if (bottom != -1)
+              {
                 g.drawLine(sx, bottom, sx + ex, bottom);
+                bottom = -1;
+              }
+
 
               inGroup = false;
             }
@@ -305,10 +312,16 @@ public void fastPaint(int horizontal, int vertical)
         {
 
           if(top!=-1)
-             g.drawLine(sx,top, sx+ex, top);
+          {
+            g.drawLine(sx, top, sx + ex, top);
+            top =-1;
+          }
           if(bottom!=-1)
-             g.drawLine(sx,bottom, sx+ex, bottom);
+           {
+             g.drawLine(sx, bottom-1, sx + ex, bottom-1);
+             bottom = -1;
 
+           }
           sy = offset + AlignmentUtil.getPixelHeight(starty, i, av.charHeight);
           g.drawLine(sx, oldY, sx, sy );
           g.drawLine(sx+ex, oldY, sx+ex, sy );
-- 
1.7.10.2