From 82e8764c422ba00b61bf62496d2c7b409a088a20 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Thu, 17 Jan 2013 22:53:08 +0000 Subject: [PATCH] commented out unneed output --- .../ruby/evoruby/lib/evo/tool/hmmscan_summary.rb | 92 ++++++++++---------- 1 file changed, 46 insertions(+), 46 deletions(-) diff --git a/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb b/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb index d2712a3..bb32da5 100644 --- a/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb +++ b/forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb @@ -165,44 +165,44 @@ module Evoruby if ( cla.is_option_set?( PARSE_OUT_DESCRIPITION_OPTION ) ) parse_descriptions = true end -/* - puts() - puts( "hmmpfam outputfile : " + inpath ) - puts( "outputfile : " + outpath ) - puts( "species : " + species ) - if ( i_e_value_threshold >= 0.0 ) - puts( "i-E-value threshold : " + i_e_value_threshold.to_s ) - else - puts( "i-E-value threshold : no threshold" ) - end - if ( parse_descriptions ) - puts( "parse descriptions : true" ) - else - puts( "parse descriptions : false" ) - end - if ( ignore_dufs ) - puts( "ignore DUFs : true" ) - else - puts( "ignore DUFs : false" ) - end - if ( column_delimiter == "\t" ) - puts( "column delimiter : TAB" ) - else - puts( "column delimiter : " + column_delimiter ) - end - if fs_e_value_threshold >= 0.0 - puts( "E-value threshold : " + fs_e_value_threshold.to_s ) - else - puts( "E-value threshold : no threshold" ) - end - if !hmm_for_protein_output.empty? - puts( "HMM for proteins : " + hmm_for_protein_output ) - end - if !uniprot.empty? - puts( "Uniprot : " + uniprot ) - end - puts() -*/ + +# puts() +# puts( "hmmpfam outputfile : " + inpath ) +# puts( "outputfile : " + outpath ) +# puts( "species : " + species ) +# if ( i_e_value_threshold >= 0.0 ) +# puts( "i-E-value threshold : " + i_e_value_threshold.to_s ) +# else +# puts( "i-E-value threshold : no threshold" ) +# end +# if ( parse_descriptions ) +# puts( "parse descriptions : true" ) +# else +# puts( "parse descriptions : false" ) +# end +# if ( ignore_dufs ) +# puts( "ignore DUFs : true" ) +# else +# puts( "ignore DUFs : false" ) +# end +# if ( column_delimiter == "\t" ) +# puts( "column delimiter : TAB" ) +# else +# puts( "column delimiter : " + column_delimiter ) +# end +# if fs_e_value_threshold >= 0.0 +# puts( "E-value threshold : " + fs_e_value_threshold.to_s ) +# else +# puts( "E-value threshold : no threshold" ) +# end +# if !hmm_for_protein_output.empty? +# puts( "HMM for proteins : " + hmm_for_protein_output ) +# end +# if !uniprot.empty? +# puts( "Uniprot : " + uniprot ) +# end +# puts() + begin parse( inpath, outpath, @@ -219,14 +219,14 @@ module Evoruby end domain_counts = get_domain_counts() - /* puts - puts( "domain counts (considering potential i-E-value threshold and ignoring of DUFs):" ) - puts( "(number of different domains: " + domain_counts.length.to_s + ")" ) - puts - puts( Util.draw_histogram( domain_counts, "#" ) ) - puts - Util.print_message( PRG_NAME, 'OK' ) - puts */ +# puts +# puts( "domain counts (considering potential i-E-value threshold and ignoring of DUFs):" ) +# puts( "(number of different domains: " + domain_counts.length.to_s + ")" ) +# puts +# puts( Util.draw_histogram( domain_counts, "#" ) ) +# puts +# Util.print_message( PRG_NAME, 'OK' ) +# puts end # def run -- 1.7.10.2