From 839949d19e1ba78e5d5d6e58fc827f417592d589 Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Sun, 1 Jul 2012 16:58:21 +0100
Subject: [PATCH] ensure all annotation dependent rendering gets refreshed

---
 src/jalview/appletgui/AnnotationPanel.java |    1 +
 src/jalview/gui/AnnotationPanel.java       |    1 +
 2 files changed, 2 insertions(+)

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index 7e6e3a1..492683d 100755
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -255,6 +255,7 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI, Adjustmen
     aa[activeRow].validateRangeAndDisplay();
 
     adjustPanelHeight();
+    ap.alignmentChanged();
     repaint();
 
     return;
diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java
index 03fbf28..c8784a5 100755
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -363,6 +363,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI,
     aa[activeRow].validateRangeAndDisplay();
 
     adjustPanelHeight();
+    ap.alignmentChanged();
     repaint();
 
     return;
-- 
1.7.10.2