From 84625d5e5a354f0cf863bda18979ee4f26677dc5 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Wed, 9 Jan 2013 05:13:15 +0000 Subject: [PATCH] iterating nexus test --- forester/test_data/nexus_test_4_1.nex | 93 +++++++++++++++++++++++++++++++++ 1 file changed, 93 insertions(+) create mode 100644 forester/test_data/nexus_test_4_1.nex diff --git a/forester/test_data/nexus_test_4_1.nex b/forester/test_data/nexus_test_4_1.nex new file mode 100644 index 0000000..99fa732 --- /dev/null +++ b/forester/test_data/nexus_test_4_1.nex @@ -0,0 +1,93 @@ +#NEXUS + +[!Data from: + Young, D. A. 1981. Are the angiosperm primitively vesselless? + Systematic Botany. 6:313-330. + Character 9 coded "0" for OTU AUST, following Riggins and Farris (1983) +] + +begin assumptions; + options deftype = ord; +end; + + + begin trees; + utree 'tree 0' =(1:0.212481,8:0.297838,(9:0.222729,((6:0.201563,7:0.194547):0.282035,(4:1.146091,(3:1.008881, +(10:0.384105,(2:0.235682,5:0.353432):0.323680):0.103875):0.413540):0.254687):0.095341):0.079254):0.000000; + +tree "tree 1"= (1:0.212481,8:0.297838,(9:0.222729,((6:0.201563,7:0.194547):0.282035,(4:1.146091,(3:1.008881, +(10:0.384105,(2:0.235682,5:0.353432):0.323680):0.103875):0.413540):0.254687):0.095341):0.079254):0.000000 + + tree=[&U]((a,b),c); + utree=[&R]((a,b),c,d) + + tree=[&R]((a,b),c,d,e) + +tree=[&U]((a,b),c); +tree=[&R]((a,b)); + + tree=[&R] + + ((a,b), + c) + + TREE 'tree 8'=[&U]((AA,BB),C C); + tree 'tree 9'=[&R]((a,b),"cc") + + tree 'tree 10'=[&R]((a,b),c) + +tree 'tree 11'=[&U]((1,2),3); +tree 'tree 12'=[&R] +( +(aa,bb),c +c); + + tree 'tree 13' =[&R] + + ((a,b),c) + + + tree "tree 14" = [&R] + + (1:0.212481,8:0.297838,(9:0.222729,((6:0.201563,7:0.194547):0.282035,(4:1.146091,(3:1.008881, + +(10:0.384105,(2:0.235682,5:0.353432):0.323680):0.103875):0.413540):0.254687):0.095341):0.079254):0.000000 + + tree "tree 15" = [&U] + + # (,) + # + # + + (1:0.212481,8:0.297838,(9 + + + + :0.222729,((6:0.201563,7: + 0.194547): + + 0.282035,(4:1.146091,(3:1.008881, + +(10:0.384105,(2:0.235682,5:0.353432):0.323680) + + + +:0.103875): + + + 0.413540): + 0.254687):0.095341):0.079254):0.000000 + +tree "tree 16"=[&R](1:0.212481,8:0.297838,(9:0.222729,((6:0.201563,7:0.194547):0.282035,(4:1.146091,(3:1.008881, +(10:0.384105,(2:0.235682,5:0.353432):0.323680):0.103875):0.413540):0.254687):0.095341):0.079254):0.000000 + +tree "tree 17"=[&U](1:0.212481,8:0.297838,(9:0.222729,((6:0.201563,7:0.194547):0.282035,(4:1.146091,(3:1.008881, +(10:0.384105,(2:0.235682,5:0.353432):0.323680):0.103875):0.413540):0.254687):0.095341):0.079254):0.000000; + + end; + + + + + + \ No newline at end of file -- 1.7.10.2