From 847ba4b538be695e1408fd9251d60792415e30cf Mon Sep 17 00:00:00 2001 From: Sasha Sherstnev Date: Tue, 17 Sep 2013 17:12:56 +0100 Subject: [PATCH] Add reference on Jronn --- website/index.html | 15 ++++++++------- website/man_about.html | 6 +++--- 2 files changed, 11 insertions(+), 10 deletions(-) diff --git a/website/index.html b/website/index.html index 4dd5d80..b2812e7 100644 --- a/website/index.html +++ b/website/index.html @@ -43,17 +43,18 @@

JABAWS 2.1

JABAWS -is free software which provides web services conveniently packaged to run on your local computer, server, cluster or Amazon EC2 instance. Services for multiple sequence alignment -include Clustal Omega, Clustal W, +is free software which provides web services conveniently packaged to run on your local computer, server, cluster or Amazon EC2 instance. +Services for multiple sequence alignment include Clustal Omega, Clustal W, MAFFT, MUSCLE, TCOFFEE and PROBCONS. Analysis services allow -prediction of the protein secondary structure with Jpred and protein disorder with DisEMBL, IUPred, -Ronn and GlobPlot; -and calculation of amino acid alignment conservation with AACon. The secondary structure for an RNA aligment is possible with -the RNAalifold program from the Vienna RNA package. +prediction of the protein secondary structure with Jpred and protein disorder with DisEMBL, +IUPred, Jronn (a Java implementation of Ronn by P. Troshin and G. Barton, unpublished), +and GlobPlot; and calculation of amino acid alignment conservation with AACon. The +secondary structure for an RNA aligment can be predicted with the RNAalifold program from the Vienna RNA package.

-JABA 2.1 Web Services installations can be accessed from the Jalview desktop application (version 2.8 onwards) and the JABAWS command-line client, and provide multiple alignment +JABA 2.1 Web Services installations can be accessed from the Jalview desktop application (version 2.8 onwards) +and the JABAWS command-line client, and provide multiple alignment and sequence analysis calculations limited only by your own computing resources.

diff --git a/website/man_about.html b/website/man_about.html index 46a7134..2c72efc 100644 --- a/website/man_about.html +++ b/website/man_about.html @@ -112,7 +112,7 @@
  • Tcoffee (version 8.99)
  • Probcons (version 1.12)
    • -

    Protein Secondary structure

    +

    Protein Secondary structure prediction

    @@ -121,7 +121,7 @@

    Amino Acid conservation

    @@ -133,7 +133,7 @@
  • RNAalifold from ViennaRNA (2.0)
    • - +All these codes including Jronn and AAcon are available at the Download section (registration is required).

    What is new in JABAWS 2.1?

    JABAWS Version 2.1 (Released 1st Oct 2013)

    JABAWS 2.1 includes several bug fixes and minor updates for JABAWS Version 2.0. These are listed below:

    -- 1.7.10.2