From 84a41556c9b336cda459339cc6f0a0cb45ec90d2 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 10 Apr 2006 11:10:26 +0000
Subject: [PATCH] dont need to set - to -

---
 src/jalview/analysis/Conservation.java |    3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/jalview/analysis/Conservation.java b/src/jalview/analysis/Conservation.java
index b914108..0aa9805 100755
--- a/src/jalview/analysis/Conservation.java
+++ b/src/jalview/analysis/Conservation.java
@@ -165,7 +165,8 @@ public class Conservation
                     {
                         c = sequence.getCharAt(i);
 
-                        if(jalview.util.Comparison.isGap(c))
+                        // No need to check if its a '-'
+                        if(c == '.' || c==' ')
                           c = '-';
 
                         if ('a' <= c && c <= 'z')
-- 
1.7.10.2