From 87e3f6da091c04a6a9277f5294f586f454bcf0e1 Mon Sep 17 00:00:00 2001 From: amwaterhouse Date: Thu, 1 Feb 2007 17:05:10 +0000 Subject: [PATCH] sequence.getStart() in findTrueIndex --- src/MCview/PDBCanvas.java | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/MCview/PDBCanvas.java b/src/MCview/PDBCanvas.java index 7da2705..ee556a3 100755 --- a/src/MCview/PDBCanvas.java +++ b/src/MCview/PDBCanvas.java @@ -449,10 +449,10 @@ public class PDBCanvas extends JPanel implements MouseListener, MouseMotionListe int findTrueIndex(int pos) { // returns the alignment position for a residue - int j = 1; // first position in PDB atom coordinate sequence + int j = sequence.getStart(); // first position in PDB atom coordinate sequence int i = 0; - while ( (i < sequence.getLength()) && (j <= pos+1)) + while ( (i < sequence.getLength()) && (j <= pos+1)) { if (!jalview.util.Comparison.isGap(sequence.getCharAt(i))) { -- 1.7.10.2