From 8963cf56e542ec741295e8c4dfcee06ba3e140fb Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 28 Jul 2006 13:19:43 +0000
Subject: [PATCH] 1.1 compatible

---
 src/jalview/datamodel/Alignment.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index 8c320f7..588134a 100755
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -811,7 +811,7 @@ public class Alignment implements AlignmentI
   {
     SeqCigar alseqs[] = new SeqCigar[sequences.size()];
     for (int i=0; i<sequences.size(); i++) {
-      alseqs[i] = new SeqCigar((SequenceI) sequences.get(i));
+      alseqs[i] = new SeqCigar((SequenceI) sequences.elementAt(i));
     }
     return new CigarArray(alseqs);
   }
-- 
1.7.10.2