From 8aee4f1149f22e54b19b6d015b8d3e82f94e0433 Mon Sep 17 00:00:00 2001
From: "cmzmasek@gmail.com"
 <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Fri, 8 Jun 2012 14:32:17 +0000
Subject: [PATCH] Edited wiki page GSDI through web user interface.

---
 wiki/GSDI.wiki |   10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/wiki/GSDI.wiki b/wiki/GSDI.wiki
index 93395b6..0df661e 100644
--- a/wiki/GSDI.wiki
+++ b/wiki/GSDI.wiki
@@ -19,14 +19,14 @@ path/to/forester.jar org.forester.application.gsdi [-options] <gene tree in phyl
   * -m: use most parimonious duplication model for GSDI: assign nodes as speciations which would otherwise be assiged as unknown because of polytomies in the species tree
   * -q: to allow species tree in other formats than phyloXML (Newick, NHX, Nexus)
 
+==== Species tree ====
+In phyloXML format (unless option -q is used), with taxonomy data in appropriate fields. Must be rooted, polytomies are allowed.
+
+==== Gene tree ====
+In phyloXM format, with taxonomy and sequence data in appropriate fields. Must be rooted an binary (no polytomies).
 
 
-== Details ==
 
-Output consists of three files:
-  * input-name_preprocessed_gene_tree.phylo.xml
-  * input-name_species_present.txt
-  * input-name_removed_nodes.txt
 
 
 == Download ==
-- 
1.7.10.2