From 8b4c661025b61e8e741721380c9a044f08fd3236 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Mon, 6 Jun 2011 21:56:20 +0000 Subject: [PATCH] Edited wiki page forester through web user interface. --- wiki/forester.wiki | 37 ++++++++++++++++++++++++++++++++++++- 1 file changed, 36 insertions(+), 1 deletion(-) diff --git a/wiki/forester.wiki b/wiki/forester.wiki index 537e2d8..c35bcfd 100644 --- a/wiki/forester.wiki +++ b/wiki/forester.wiki @@ -10,7 +10,7 @@ Author: [http://www.cmzmasek.net/ Christian M Zmasek], Sanford-Burnham Medical R Copyright (C) 2011 Christian M Zmasek. All rights reserved. -= Parsing of Phylogenetic Trees and Displaying them with Archaeopteryx = += Parsing of phylogenetic trees and displaying them with Archaeopteryx = This needs file "forester.jar" to be in the class-path. @@ -50,4 +50,39 @@ public class Example1 { } } +}}} + + += Creating a new tree and displaying it with Archaeopteryx = + +This needs file "forester.jar" to be in the class-path. + +{{{ + +package examples; + +import org.forester.archaeopteryx.Archaeopteryx; +import org.forester.phylogeny.Phylogeny; +import org.forester.phylogeny.PhylogenyNode; + +public class Example2 { + + public static void main( final String[] args ) { + // Creating a new rooted tree with two external nodes. + final Phylogeny phy = new Phylogeny(); + final PhylogenyNode root = new PhylogenyNode(); + final PhylogenyNode d1 = new PhylogenyNode(); + final PhylogenyNode d2 = new PhylogenyNode(); + root.setName( "root" ); + d1.setName( "descendant 1" ); + d2.setName( "descendant 2" ); + root.addAsChild( d1 ); + root.addAsChild( d2 ); + phy.setRoot( root ); + phy.setRooted( true ); + // Displaying the newly created tree with Archaeopteryx. + Archaeopteryx.createApplication( phy ); + } +} + }}} \ No newline at end of file -- 1.7.10.2