From 8c24d666aa965338168416f8ca3be864569a1c24 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Mon, 2 Apr 2007 13:09:32 +0000
Subject: [PATCH] featuresAdded call for transferred PDB features

---
 src/jalview/gui/AppJMol.java |   11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/src/jalview/gui/AppJMol.java b/src/jalview/gui/AppJMol.java
index 3d24bc8..14acb14 100644
--- a/src/jalview/gui/AppJMol.java
+++ b/src/jalview/gui/AppJMol.java
@@ -124,8 +124,10 @@ public synchronized void addSequence(SequenceI [] seq)
       {
         StructureSelectionManager.getStructureSelectionManager()
             .setMapping(seq, alreadyMapped, AppletFormatAdapter.FILE);
-        ap.seqPanel.seqCanvas.fr.featuresAdded();
-        ap.paintAlignment(true);
+        if (ap.seqPanel.seqCanvas.fr!=null) {
+          ap.seqPanel.seqCanvas.fr.featuresAdded();
+          ap.paintAlignment(true);
+        }
         return;
       }
     }
@@ -587,7 +589,7 @@ public synchronized void addSequence(SequenceI [] seq)
 //End StructureListener
 ////////////////////////////
 
-  FeatureRenderer fr;
+  FeatureRenderer fr=null;
   public void colourBySequence(AlignmentPanel ap)
   {
     if(!colourBySequence)
@@ -729,7 +731,6 @@ public synchronized void addSequence(SequenceI [] seq)
       ssm = StructureSelectionManager.getStructureSelectionManager();
       MCview.PDBfile pdbFile = ssm.setMapping(sequence, pdbentry.getFile(), AppletFormatAdapter.FILE);
       ssm.addStructureViewerListener(this);
-
       Vector chains = new Vector();
       for(int i=0; i<pdbFile.chains.size(); i++)
       {
@@ -746,6 +747,8 @@ public synchronized void addSequence(SequenceI [] seq)
 
         colourBySequence(ap);
       }
+      if (fr!=null)
+        fr.featuresAdded();
 
       loadingFromArchive = false;
     }
-- 
1.7.10.2