From 8c8433dbbca18eb7955537a8756fba92d044dd41 Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 27 Oct 2011 12:18:54 +0100
Subject: [PATCH] (JAL-961) more calculation annotation and result object
 getters

---
 src/jalview/api/AlignViewportI.java |   24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index 5189e70..914f010 100644
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -52,6 +52,11 @@ public interface AlignViewportI
   AlignmentAnnotation getAlignmentQualityAnnot();
 
   AlignmentAnnotation getAlignmentConservationAnnotation();
+  /**
+   * get the container for alignment consensus annotation
+   * @return
+   */
+  AlignmentAnnotation getAlignmentConsensusAnnotation();
 
   /**
    * Test to see if viewport is still open and active
@@ -69,4 +74,23 @@ public interface AlignViewportI
    * 
    */
   public int getConsPercGaps();
+
+  /**
+   * set the consensus result object for the viewport
+   * @param hconsensus
+   */
+  void setSequenceConsensusHash(Hashtable[] hconsensus);
+
+  /**
+   * 
+   * @return the alignment annotatino row for the structure consensus calculation
+   */
+  AlignmentAnnotation getAlignmentStrucConsensusAnnotation();
+
+  /**
+   * set the Rna structure consensus result object for the viewport
+   * @param hStrucConsensus 
+   */
+  void setRnaStructureConsensusHash(Hashtable[] hStrucConsensus);
+
 }
-- 
1.7.10.2