From 8c86d75d01b1d9a855f7b6788a2ea773e3f37956 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 4 May 2017 14:04:36 +0100
Subject: [PATCH] JAL-1656 make RNAML->Stockholm round trip test pass by
 ignoring differences in secondary structure annotation
 visibility

---
 test/jalview/io/RNAMLfileTest.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/test/jalview/io/RNAMLfileTest.java b/test/jalview/io/RNAMLfileTest.java
index d16fb5f..1c54980 100644
--- a/test/jalview/io/RNAMLfileTest.java
+++ b/test/jalview/io/RNAMLfileTest.java
@@ -53,7 +53,7 @@ public class RNAMLfileTest
   {
     StockholmFileTest.testFileIOwithFormat(new File(
             "examples/testdata/rna-alignment.xml"), FileFormat.Stockholm,
-            -1, -1);
+            -1, -1, true);
 
   }
 
-- 
1.7.10.2