From 8d60f5c3375c9e0deaddf0dd8b9e06ebe3ee0908 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 27 Aug 2013 16:08:17 +0100
Subject: [PATCH] JAL-1359 simpler logic for deciding if all threads have
 finished. Note: I couldn't reproduce the JAL-1359 bug after
 rebuilding my JABAWS development server - so trust me on
 this fix :)

---
 src/jalview/ws/jws2/Jws2Discoverer.java |    4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/src/jalview/ws/jws2/Jws2Discoverer.java b/src/jalview/ws/jws2/Jws2Discoverer.java
index 8ad14e0..2724d29 100644
--- a/src/jalview/ws/jws2/Jws2Discoverer.java
+++ b/src/jalview/ws/jws2/Jws2Discoverer.java
@@ -189,7 +189,9 @@ public class Jws2Discoverer implements Runnable, WSMenuEntryProviderI
       ;
       for (JabaWsServerQuery squery : qrys)
       {
-        finished = finished && !squery.isRunning();
+        if (squery.isRunning()){
+          finished=false;
+        }
       }
       if (aborted)
       {
-- 
1.7.10.2