From 8db8d34d6839742068935c364b790de72dc3bc94 Mon Sep 17 00:00:00 2001 From: tcofoegbu Date: Tue, 18 Aug 2015 16:17:28 +0100 Subject: [PATCH] JAL-1861 bugfix to allow parsing of stockholm files with missing annotations --- src/jalview/io/StockholmFile.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java index 6490d28..f652035 100644 --- a/src/jalview/io/StockholmFile.java +++ b/src/jalview/io/StockholmFile.java @@ -533,9 +533,9 @@ public class StockholmFile extends AlignFile } else { - throw new IOException(MessageManager.formatMessage( - "exception.error_parsing_line", new String[] - { line })); + // throw new IOException(MessageManager.formatMessage( + // "exception.error_parsing_line", new String[] { line })); + System.err.println(">> missing annotation: " + line); } } else if (annType.equals("GC")) -- 1.7.10.2