From 8f49a4f326a9a7b0de97682eb62402f66d469cf3 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Fri, 4 Mar 2022 16:38:01 +0000 Subject: [PATCH] JAL-3746 structure mapping preference docs for JAL-3817 --- help/help/html/features/preferences.html | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/help/help/html/features/preferences.html b/help/help/html/features/preferences.html index d091272..a33a076 100755 --- a/help/help/html/features/preferences.html +++ b/help/help/html/features/preferences.html @@ -236,6 +236,13 @@ installed the chosen viewer in a non-standard location, you can specify it here, by entering the full path to its executable.
For Chimera, locate the path to the chimera program, similarly for ChimeraX and Pymol. Rather than typing in the path, you can also double-click this field to open a file chooser dialog.

+ Sequence <-> Structure Mapping Method - This setting controls whether + Jalview attempts to retrieve mappings between Uniprot protein + sequences and 3D structures in the PDBe with SIFTS, or constructs a + mapping by conservative alignment between the sequences and chains + in the 3D structure data using the Needleman and Wunsch algorithm. + SIFTS is enabled by default. +

PDB Fields shown in Search and Structure Summaries - ticks in this table indicate fields shown by default when browsing results of a free text search via the PDB sequence fetcher, or 3D structures -- 1.7.10.2