From 8f5e471f79fdd55b7dc397f942232cb036c14017 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 18 Oct 2017 17:16:01 +0100
Subject: [PATCH] JAL-2779 remove dead code

---
 src/jalview/gui/Desktop.java          |   28 ----------------------------
 src/jalview/gui/PromptUserConfig.java |   10 ++--------
 2 files changed, 2 insertions(+), 36 deletions(-)

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index cb3ed95..ad80ca5 100644
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -68,8 +68,6 @@ import java.awt.dnd.DropTargetEvent;
 import java.awt.dnd.DropTargetListener;
 import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
-import java.awt.event.FocusEvent;
-import java.awt.event.FocusListener;
 import java.awt.event.KeyEvent;
 import java.awt.event.MouseAdapter;
 import java.awt.event.MouseEvent;
@@ -433,24 +431,6 @@ public class Desktop extends jalview.jbgui.GDesktop
     });
     desktop.addMouseListener(ma);
 
-    this.addFocusListener(new FocusListener()
-    {
-
-      @Override
-      public void focusLost(FocusEvent e)
-      {
-        // TODO Auto-generated method stub
-
-      }
-
-      @Override
-      public void focusGained(FocusEvent e)
-      {
-        Cache.log.debug("Relaying windows after focus gain");
-        // make sure that we sort windows properly after we gain focus
-        instance.relayerWindows();
-      }
-    });
     this.setDropTarget(new java.awt.dnd.DropTarget(desktop, this));
     // Spawn a thread that shows the splashscreen
     SwingUtilities.invokeLater(new Runnable()
@@ -2514,14 +2494,6 @@ public class Desktop extends jalview.jbgui.GDesktop
     }
   }
 
-  /**
-   * fixes stacking order after a modal dialog to ensure windows that should be
-   * on top actually are
-   */
-  public void relayerWindows()
-  {
-
-  }
 
   /**
    * Accessor method to quickly get all the AlignmentFrames loaded.
diff --git a/src/jalview/gui/PromptUserConfig.java b/src/jalview/gui/PromptUserConfig.java
index 6261015..cb59452 100644
--- a/src/jalview/gui/PromptUserConfig.java
+++ b/src/jalview/gui/PromptUserConfig.java
@@ -24,8 +24,6 @@ import jalview.bin.Cache;
 
 import java.awt.Component;
 
-import javax.swing.JOptionPane;
-
 public class PromptUserConfig implements Runnable
 {
   /**
@@ -120,6 +118,7 @@ public class PromptUserConfig implements Runnable
     this.allowCancel = allowCancel;
   }
 
+  @Override
   public void run()
   {
     if (property == null)
@@ -206,12 +205,7 @@ public class PromptUserConfig implements Runnable
               (allowCancel) ? JvOptionPane.YES_NO_CANCEL_OPTION
                       : JvOptionPane.YES_NO_OPTION,
               JvOptionPane.QUESTION_MESSAGE);
-      // now, ask the desktop to relayer any external windows that might have
-      // been obsured
-      if (Desktop.instance != null)
-      {
-        Desktop.instance.relayerWindows();
-      }
+
       // and finish parsing the result
       jalview.bin.Cache.log.debug("Got response : " + reply);
       if (reply == JvOptionPane.YES_OPTION)
-- 
1.7.10.2