From 8fd0b8182a10ed77b078160fffccca67f7ecb118 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 10 Feb 2005 18:12:50 +0000
Subject: [PATCH] watch end of sequence when asking for (start, end)

---
 src/jalview/datamodel/Sequence.java |    2 ++
 1 file changed, 2 insertions(+)

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index eceddf1..cf578c0 100755
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -139,6 +139,8 @@ public class Sequence implements SequenceI
     return this.sequence;
   }
   public String getSequence(int start,int end) {
+    if(end>=sequence.length())
+      end = sequence.length()-1;
     return this.sequence.substring(start,end);
   }
 
-- 
1.7.10.2