From 90336678e0ea5403d2803942eb3dd7f8f4436a14 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 27 Aug 2015 16:33:19 +0100
Subject: [PATCH] JAL-1830 tests relocated to AlignViewportTest after
 refactoring

---
 .../structure/StructureSelectionManagerTest.java   |  121 --------------------
 1 file changed, 121 deletions(-)

diff --git a/test/jalview/structure/StructureSelectionManagerTest.java b/test/jalview/structure/StructureSelectionManagerTest.java
index 3cbdbad..e4cc336 100644
--- a/test/jalview/structure/StructureSelectionManagerTest.java
+++ b/test/jalview/structure/StructureSelectionManagerTest.java
@@ -1,20 +1,13 @@
 package jalview.structure;
 
 import static org.testng.AssertJUnit.assertEquals;
-import static org.testng.AssertJUnit.assertNotNull;
 import static org.testng.AssertJUnit.assertTrue;
 
 import jalview.datamodel.AlignedCodonFrame;
-import jalview.gui.AlignFrame;
-import jalview.gui.Desktop;
-import jalview.io.FileLoader;
-import jalview.io.FormatAdapter;
 
 import java.util.HashSet;
-import java.util.LinkedHashSet;
 import java.util.Set;
 
-import org.testng.annotations.BeforeClass;
 import org.testng.annotations.BeforeMethod;
 import org.testng.annotations.Test;
 
@@ -22,13 +15,6 @@ public class StructureSelectionManagerTest
 {
   private StructureSelectionManager ssm;
 
-  @BeforeClass(alwaysRun = true)
-  public static void setUpBeforeClass() throws Exception
-  {
-    jalview.bin.Jalview.main(new String[] { "-props",
-        "test/jalview/testProps.jvprops" });
-  }
-
  @BeforeMethod(alwaysRun = true)
   public void setUp()
   {
@@ -86,111 +72,4 @@ public class StructureSelectionManagerTest
     assertTrue(ssm.seqmappings.contains(acf2));
     assertTrue(ssm.seqmappings.contains(acf3));
   }
-
-  /**
-   * Test that a mapping is not deregistered if an alignment holds a reference
-   * to it
-   */
-  @Test(groups ={ "Functional" })
-  public void testDeregisterMapping_withAlignmentReference()
-  {
-    Desktop d = Desktop.instance;
-    assertNotNull(d);
-
-    /*
-     * alignment with reference to mappings
-     */
-    AlignFrame af1 = new FileLoader().LoadFileWaitTillLoaded(
-            ">Seq1\nCAGT\n", FormatAdapter.PASTE);
-
-    AlignedCodonFrame acf1 = new AlignedCodonFrame();
-    AlignedCodonFrame acf2 = new AlignedCodonFrame();
-
-    Set<AlignedCodonFrame> mappings = new LinkedHashSet<AlignedCodonFrame>();
-    mappings.add(acf1);
-    mappings.add(acf2);
-    af1.getViewport().getAlignment().setCodonFrames(mappings);
-
-    /*
-     * Add one and remove it.
-     */
-    ssm.registerMapping(acf1);
-    ssm.deregisterMapping(acf1);
-    assertEquals(1, ssm.seqmappings.size());
-    assertTrue(ssm.seqmappings.contains(acf1));
-  }
-
-  /**
-   * Test that a mapping is deregistered if no alignment holds a reference to it
-   */
-  @Test(groups ={ "Functional" })
-  public void testDeregisterMapping_withNoReference()
-  {
-    Desktop d = Desktop.instance;
-    assertNotNull(d);
-  
-    /*
-     * alignment with reference to mappings
-     */
-    AlignFrame af1 = new FileLoader().LoadFileWaitTillLoaded(
-            ">Seq1\nCAGT\n", FormatAdapter.PASTE);
-  
-    AlignedCodonFrame acf1 = new AlignedCodonFrame();
-    AlignedCodonFrame acf2 = new AlignedCodonFrame();
-  
-    Set<AlignedCodonFrame> mappings = new LinkedHashSet<AlignedCodonFrame>();
-    mappings.add(acf2);
-    af1.getViewport().getAlignment().setCodonFrames(mappings);
-  
-    /*
-     * Add one and remove it.
-     */
-    ssm.registerMapping(acf1);
-    assertEquals(1, ssm.seqmappings.size());
-    assertTrue(ssm.seqmappings.contains(acf1));
-    ssm.deregisterMapping(acf1);
-    assertEquals(0, ssm.seqmappings.size());
-  }
-
-  /**
-   * Test that a mapping is not deregistered when a second view is closed but
-   * the first still holds a reference to the mapping
-   */
-  @Test(groups ={ "Functional" })
-  public void testDeregisterMapping_onCloseView()
-  {
-    /*
-     * alignment with reference to mappings
-     */
-    AlignFrame af1 = new FileLoader().LoadFileWaitTillLoaded(
-            ">Seq1\nCAGT\n", FormatAdapter.PASTE);
-  
-    AlignedCodonFrame acf1 = new AlignedCodonFrame();
-    AlignedCodonFrame acf2 = new AlignedCodonFrame();
-  
-    Set<AlignedCodonFrame> mappings = new LinkedHashSet<AlignedCodonFrame>();
-    mappings.add(acf1);
-    mappings.add(acf2);
-    af1.getViewport().getAlignment().setCodonFrames(mappings);
-    af1.newView_actionPerformed(null);
-
-    /*
-     * Verify that creating the alignment for the new View has registered the
-     * mappings
-     */
-    ssm = StructureSelectionManager
-            .getStructureSelectionManager(Desktop.instance);
-    assertEquals(2, ssm.seqmappings.size());
-    assertTrue(ssm.seqmappings.contains(acf1));
-    assertTrue(ssm.seqmappings.contains(acf2));
-
-    /*
-     * Close the second view. Verify that mappings are not removed as the first
-     * view still holds a reference to them.
-     */
-    af1.closeMenuItem_actionPerformed(false);
-    assertEquals(2, ssm.seqmappings.size());
-    assertTrue(ssm.seqmappings.contains(acf1));
-    assertTrue(ssm.seqmappings.contains(acf2));
-  }
 }
-- 
1.7.10.2