From 930957c979c02fb620083ae1f972216d5f5050fa Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Wed, 21 Sep 2016 16:39:31 +0100
Subject: [PATCH] =?utf8?q?JAL-2215=20fix=20-=20trigger=20alignment=20update=20?=
 =?utf8?q?when=20=E2=80=98ignore=20gaps=E2=80=99=20setting=20changed?=
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---
 src/jalview/gui/AnnotationLabels.java |    1 +
 1 file changed, 1 insertion(+)

diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index f995c60..1a9541c 100755
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -481,6 +481,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
             {
               ap.av.setIgnoreGapsConsensus(cbmi.getState(), ap);
             }
+            ap.alignmentChanged();
           }
         });
         pop.add(cbmi);
-- 
1.7.10.2