From 931bd79285961f259c0c6b9bcfc4166465054423 Mon Sep 17 00:00:00 2001
From: Ben Soares <b.soares@dundee.ac.uk>
Date: Fri, 4 Nov 2022 09:58:02 +0000
Subject: [PATCH] JAL-4064 JAL-4054 Combined install4j10 template with new
 architectures. Added scheme associations for macOS.

---
 utils/install4j/install4j10_template.install4j |  175 +++++++++++-------------
 1 file changed, 80 insertions(+), 95 deletions(-)

diff --git a/utils/install4j/install4j10_template.install4j b/utils/install4j/install4j10_template.install4j
index c7d0131..77cd42e 100644
--- a/utils/install4j/install4j10_template.install4j
+++ b/utils/install4j/install4j10_template.install4j
@@ -23,18 +23,22 @@
       <variable name="JAVA_VERSION" value="11" />
       <variable name="JAVA_INTEGER_VERSION" value="11" />
       <variable name="VERSION" value="DEVELOPMENT" />
-      <variable name="MACOS_JAVA_VM_DIR" value="${compiler:env.HOME}/buildtools/jre/jre-${compiler:JAVA_INTEGER_VERSION}-mac-x64/jre" />
-      <variable name="WINDOWS_JAVA_VM_DIR" value="${compiler:env.HOME}/buildtools/jre/jre-${compiler:JAVA_INTEGER_VERSION}-windows-x64/jre" />
-      <variable name="LINUX_JAVA_VM_DIR" value="${compiler:env.HOME}/buildtools/jre/jre-${compiler:JAVA_INTEGER_VERSION}-linux-x64/jre" />
-      <variable name="MACOS_JAVA_VM_TGZ" value="${compiler:env.HOME}/buildtools/jre/tgz/jre_${compiler:JAVA_INTEGER_VERSION}_mac_x64.tar.gz" />
-      <variable name="WINDOWS_JAVA_VM_TGZ" value="${compiler:env.HOME}/buildtools/jre/tgz/jre_${compiler:JAVA_INTEGER_VERSION}_windows_x64.tar.gz" />
-      <variable name="LINUX_JAVA_VM_TGZ" value="${compiler:env.HOME}/buildtools/jre/tgz/jre_${compiler:JAVA_INTEGER_VERSION}_linux_x64.tar.gz" />
+      <variable name="MACOS_X64_JAVA_VM_DIR" value="${compiler:env.HOME}/buildtools/jre/jre-${compiler:JAVA_INTEGER_VERSION}-mac-x64/jre" />
+      <variable name="MACOS_AARCH64_JAVA_VM_DIR" value="${compiler:env.HOME}/buildtools/jre/jre-${compiler:JAVA_INTEGER_VERSION}-mac-aarch64/jre" />
+      <variable name="WINDOWS_X64_JAVA_VM_DIR" value="${compiler:env.HOME}/buildtools/jre/jre-${compiler:JAVA_INTEGER_VERSION}-windows-x64/jre" />
+      <variable name="LINUX_X64_JAVA_VM_DIR" value="${compiler:env.HOME}/buildtools/jre/jre-${compiler:JAVA_INTEGER_VERSION}-linux-x64/jre" />
+      <variable name="LINUX_AARCH64_JAVA_VM_DIR" value="${compiler:env.HOME}/buildtools/jre/jre-${compiler:JAVA_INTEGER_VERSION}-linux-aarch64/jre" />
+      <variable name="MACOS_X64_JAVA_VM_TGZ" value="${compiler:env.HOME}/buildtools/jre/tgz/jre_${compiler:JAVA_INTEGER_VERSION}_mac_x64.tar.gz" />
+      <variable name="MACOS_AARCH64_JAVA_VM_TGZ" value="${compiler:env.HOME}/buildtools/jre/tgz/jre_${compiler:JAVA_INTEGER_VERSION}_mac_aarch64.tar.gz" />
+      <variable name="WINDOWS_X64_JAVA_VM_TGZ" value="${compiler:env.HOME}/buildtools/jre/tgz/jre_${compiler:JAVA_INTEGER_VERSION}_windows_x64.tar.gz" />
+      <variable name="LINUX_X64_JAVA_VM_TGZ" value="${compiler:env.HOME}/buildtools/jre/tgz/jre_${compiler:JAVA_INTEGER_VERSION}_linux_x64.tar.gz" />
+      <variable name="LINUX_AARCH64_JAVA_VM_TGZ" value="${compiler:env.HOME}/buildtools/jre/tgz/jre_${compiler:JAVA_INTEGER_VERSION}_linux_aarch64.tar.gz" />
       <variable name="COPYRIGHT_MESSAGE" value="..." />
       <variable name="BUNDLE_ID" value="org.jalview.jalview-desktop" />
       <variable name="INTERNAL_ID" value="Jalview" />
       <variable name="WINDOWS_APPLICATION_ID" value="6595-2347-1923-0725" />
-      <variable name="MACOS_DMG_DS_STORE" value="jalview_dmg_DS_Store" />
-      <variable name="MACOS_DMG_BG_IMAGE" value="jalview_dmg_background-72dpi.png" />
+      <variable name="MACOS_DMG_DS_STORE" value="utils/channels/default/images/jalview_default_dmg_DS_Store" />
+      <variable name="MACOS_DMG_BG_IMAGE" value="utils/channels/default/images/jalview_default_dmg_background-72dpi.png" />
       <variable name="WRAPPER_LINK" value="jalview" />
       <variable name="BASH_WRAPPER_SCRIPT" value="jalview.sh" />
       <variable name="WRAPPER_SCRIPT_BIN_DIR" value="bin" />
@@ -86,25 +90,20 @@
   <files defaultUninstallMode="2">
     <filesets>
       <fileset name="Full file set" id="734" customizedId="FULL_FILE_SET" />
-      <fileset name="Mac OS X JRE" id="880" />
-      <fileset name="Windows JRE" id="882" />
-      <fileset name="Jalview application" id="1873" />
+      <fileset name="macOS x64 JVM" id="2801" customizedId="MACOS_X64_JVM" />
+      <fileset name="macOS aarch64 JVM" id="2803" customizedId="MACOS_AARCH64_JVM" />
     </filesets>
     <roots>
       <root id="735" fileset="734" />
-      <root id="881" fileset="880" />
-      <root id="883" fileset="882" />
-      <root id="1874" fileset="1873" />
+      <root id="2802" fileset="2801" />
+      <root id="2804" fileset="2803" />
     </roots>
     <mountPoints>
-      <mountPoint id="454" />
       <mountPoint id="736" root="735" />
-      <mountPoint id="884" root="881" />
-      <mountPoint id="885" root="883" />
-      <mountPoint id="1875" root="1874" />
+      <mountPoint id="2805" root="2802" />
+      <mountPoint id="2806" root="2804" />
     </mountPoints>
     <entries>
-      <dirEntry mountPoint="454" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_FILES_DIR}/${compiler:JAVA_VERSION}" uninstallMode="2" overrideOverwriteMode="true" overrideUninstallMode="true" subDirectory="files" />
       <dirEntry mountPoint="736" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_CHANNEL_DIR}/${compiler:JAVA_VERSION}" uninstallMode="2" overrideOverwriteMode="true" overrideUninstallMode="true" subDirectory="files">
         <exclude>
           <entry location="${compiler:WRAPPER_SCRIPT_BIN_DIR}" />
@@ -112,9 +111,8 @@
       </dirEntry>
       <dirEntry mountPoint="736" file="${compiler:JALVIEW_DIR}/examples" overwriteMode="1" uninstallMode="2" overrideFileMode="true" overrideOverwriteMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="examples" />
       <dirEntry mountPoint="736" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_CHANNEL_DIR}/${compiler:JAVA_VERSION}/${compiler:WRAPPER_SCRIPT_BIN_DIR}" fileMode="755" overrideFileMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="${compiler:WRAPPER_SCRIPT_BIN_DIR}" overrideDirMode="true" />
-      <dirEntry mountPoint="884" file="${compiler:MACOS_JAVA_VM_DIR}" fileMode="755" overrideFileMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="${compiler:JRE_DIR}" />
-      <dirEntry mountPoint="885" file="${compiler:WINDOWS_JAVA_VM_DIR}" fileMode="755" overrideFileMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="${compiler:JRE_DIR}" />
-      <dirEntry mountPoint="1875" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_CHANNEL_DIR}/${compiler:JAVA_VERSION}/${compiler:GETDOWN_DIST_DIR}" overwriteMode="1" uninstallMode="2" overrideFileMode="true" overrideOverwriteMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="${compiler:GETDOWN_DIST_DIR}" overrideDirMode="true" />
+      <dirEntry mountPoint="2805" file="${compiler:MACOS_X64_JAVA_VM_DIR}" entryMode="subdir" subDirectory="${compiler:JRE_DIR}" />
+      <dirEntry mountPoint="2806" file="${compiler:MACOS_AARCH64_JAVA_VM_DIR}" entryMode="subdir" subDirectory="${compiler:JRE_DIR}" />
     </entries>
     <components>
       <component name="jalview_getdown" id="1031">
@@ -122,26 +120,6 @@
           <entry filesetId="734" />
         </include>
       </component>
-      <component name="macos_java_vm" id="1155">
-        <include>
-          <entry filesetId="880" />
-        </include>
-      </component>
-      <component name="windows_java_vm" id="1156">
-        <include>
-          <entry filesetId="882" />
-        </include>
-      </component>
-      <component name="getdown" id="1276">
-        <include>
-          <entry defaultFileset="true" />
-        </include>
-      </component>
-      <component name="jalview" id="1881">
-        <include>
-          <entry filesetId="1873" />
-        </include>
-      </component>
     </components>
   </files>
   <launchers>
@@ -169,6 +147,11 @@
       <iconImageFiles>
         <file path="${compiler:JALVIEW_DIR}/${compiler:PNG_ICON_FILE}" />
       </iconImageFiles>
+      <macStaticAssociations>
+        <urlHandler scheme="jalview" />
+        <urlHandler scheme="jalviews" />
+        <urlHandler scheme="${compiler:EXTRA_SCHEME}" />
+      </macStaticAssociations>
     </launcher>
   </launchers>
   <installerGui autoUpdateDescriptorUrl="https://www.jalview.org/install4j/updates.xml">
@@ -1416,31 +1399,35 @@ ${compiler:JALVIEW_APPLICATION_NAME} will now launch.</property>
   </installerGui>
   <mediaSets>
     <windows name="Windows x64 EXE Installer" id="743" customizedId="WINDOWS-X64-EXE" mediaFileName="${compiler:APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:APPLICATION_FOLDER}" runPostProcessor="true" postProcessor="${compiler:JSIGN_SH} $EXECUTABLE" customInstallBaseDir="~/AppData/Local" architecture="64">
-      <excludedComponents>
-        <component id="1155" />
-        <component id="1156" />
-        <component id="1276" />
-        <component id="1881" />
-      </excludedComponents>
+      <excludedBeans>
+        <bean refId="2746" />
+      </excludedBeans>
       <exclude>
         <entry defaultFileset="true" />
-        <entry filesetId="880" />
-        <entry filesetId="882" />
-        <entry filesetId="1873" />
-        <entry filesetId="2105" />
+        <entry filesetId="2801" />
+        <entry filesetId="2803" />
       </exclude>
-      <jreBundle jreBundleSource="preCreated" includedJre="${compiler:WINDOWS_JAVA_VM_TGZ}" manualJreEntry="true" />
+      <jreBundle jreBundleSource="preCreated" includedJre="${compiler:WINDOWS_X64_JAVA_VM_TGZ}" manualJreEntry="true" />
     </windows>
-    <macosArchive name="macOS Disk Image" id="878" customizedId="MACOS-X64-DMG" mediaFileName="${compiler:APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" volumeName="${compiler:INSTALLER_NAME}" launcherId="737" executeSetupApp="true" setupAppId="2746">
-      <excludedComponents>
-        <component id="1156" />
-        <component id="1276" />
-        <component id="1881" />
-      </excludedComponents>
+    <macosArchive name="macOS x64 Disk Image" id="878" customizedId="MACOS-X64-DMG" mediaFileName="${compiler:APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-macOS-x64-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" volumeName="${compiler:INSTALLER_NAME}" launcherId="737" setupAppId="2746">
+      <exclude>
+        <entry defaultFileset="true" />
+        <entry filesetId="2803" />
+      </exclude>
+      <jreBundle jreBundleSource="none" includedJre="${compiler:MACOS_X64_JAVA_VM_TGZ}" manualJreEntry="true" />
+      <topLevelFiles>
+        <symlink name="&quot; &quot;" target="/Applications" />
+        <file name=".background/jalview_dmg_background.png" file="${compiler:JALVIEW_DIR}/${compiler:MACOS_DMG_BG_IMAGE}" />
+        <file name=".DS_Store" file="${compiler:JALVIEW_DIR}/${compiler:MACOS_DMG_DS_STORE}" />
+        <file name="${compiler:JALVIEW_APPLICATION_NAME}.app/Contents/Resources/Jalview-File.icns" file="${compiler:JALVIEW_DIR}/${compiler:INSTALL4J_UTILS_DIR}/Jalview-File.icns" />
+        <file name="${compiler:JALVIEW_APPLICATION_NAME}.app/Contents/Resources/jvl_file.icns" file="${compiler:JALVIEW_DIR}/${compiler:INSTALL4J_UTILS_DIR}/jvl_file.icns" />
+        <symlink name="${compiler:JALVIEW_APPLICATION_NAME}.app/Contents/MacOS/${compiler:WRAPPER_LINK}" target="../Resources/app/${compiler:WRAPPER_SCRIPT_BIN_DIR}/${compiler:BASH_WRAPPER_SCRIPT}" />
+      </topLevelFiles>
+    </macosArchive>
+    <macosArchive name="macOS aarch64 Disk Image" id="2796" customizedId="MACOS-AARCH64-DMG" mediaFileName="${compiler:APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-macOS-aarch64-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" volumeName="${compiler:INSTALLER_NAME}" architecture="aarch64" launcherId="737" setupAppId="2746">
       <exclude>
         <entry defaultFileset="true" />
-        <entry filesetId="882" />
-        <entry filesetId="1873" />
+        <entry filesetId="2801" />
       </exclude>
       <jreBundle jreBundleSource="none" />
       <topLevelFiles>
@@ -1452,59 +1439,57 @@ ${compiler:JALVIEW_APPLICATION_NAME} will now launch.</property>
         <symlink name="${compiler:JALVIEW_APPLICATION_NAME}.app/Contents/MacOS/${compiler:WRAPPER_LINK}" target="../Resources/app/${compiler:WRAPPER_SCRIPT_BIN_DIR}/${compiler:BASH_WRAPPER_SCRIPT}" />
       </topLevelFiles>
     </macosArchive>
-    <unixInstaller name="Linux x64 Shell Installer" id="1595" customizedId="LINUX-X64-SH" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-linux_x64-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}" customInstallBaseDir="~/opt/">
-      <excludedComponents>
-        <component id="1155" />
-        <component id="1156" />
-        <component id="1276" />
-        <component id="1881" />
-      </excludedComponents>
+    <unixInstaller name="Linux x64 Shell Installer" id="1595" customizedId="LINUX-X64-SH" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-linux-x64-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}" customInstallBaseDir="~/opt/">
+      <excludedBeans>
+        <bean refId="2746" />
+      </excludedBeans>
+      <exclude>
+        <entry defaultFileset="true" />
+        <entry filesetId="2801" />
+        <entry filesetId="2803" />
+      </exclude>
+      <jreBundle jreBundleSource="preCreated" includedJre="${compiler:LINUX_X64_JAVA_VM_TGZ}" manualJreEntry="true" />
+    </unixInstaller>
+    <unixInstaller name="Linux aarch64 Shell Installer" id="2782" customizedId="LINUX-AARCH64-SH" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-linux-aarch64-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}" customInstallBaseDir="~/opt/">
+      <excludedBeans>
+        <bean refId="2746" />
+      </excludedBeans>
       <exclude>
         <entry defaultFileset="true" />
-        <entry filesetId="880" />
-        <entry filesetId="882" />
-        <entry filesetId="1873" />
-        <entry filesetId="2105" />
+        <entry filesetId="2801" />
+        <entry filesetId="2803" />
       </exclude>
-      <jreBundle jreBundleSource="preCreated" includedJre="${compiler:LINUX_JAVA_VM_TGZ}" manualJreEntry="true" />
+      <jreBundle jreBundleSource="preCreated" includedJre="${compiler:LINUX_AARCH64_JAVA_VM_TGZ}" manualJreEntry="true" />
     </unixInstaller>
     <unixArchive name="Unix .tar.gz Archive" id="1596" customizedId="UNIX--TGZ" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}">
-      <excludedComponents>
-        <component id="1155" />
-        <component id="1156" />
-        <component id="1276" />
-        <component id="1881" />
-      </excludedComponents>
+      <excludedBeans>
+        <bean refId="2746" />
+      </excludedBeans>
       <exclude>
         <entry defaultFileset="true" />
-        <entry filesetId="880" />
-        <entry filesetId="882" />
-        <entry filesetId="1873" />
-        <entry filesetId="2105" />
+        <entry filesetId="2801" />
+        <entry filesetId="2803" />
       </exclude>
-      <jreBundle jreBundleSource="none" includedJre="${compiler:LINUX_JAVA_VM_TGZ}" manualJreEntry="true" />
+      <jreBundle jreBundleSource="none" includedJre="${compiler:LINUX_X64_JAVA_VM_TGZ}" manualJreEntry="true" />
     </unixArchive>
     <unixInstaller name="Unix Shell Installer" id="2639" customizedId="UNIX--SH" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}" customInstallBaseDir="~/opt/">
-      <excludedComponents>
-        <component id="1155" />
-        <component id="1156" />
-        <component id="1276" />
-        <component id="1881" />
-      </excludedComponents>
+      <excludedBeans>
+        <bean refId="2746" />
+      </excludedBeans>
       <exclude>
         <entry defaultFileset="true" />
-        <entry filesetId="880" />
-        <entry filesetId="882" />
-        <entry filesetId="1873" />
-        <entry filesetId="2105" />
+        <entry filesetId="2801" />
+        <entry filesetId="2803" />
       </exclude>
-      <jreBundle jreBundleSource="none" includedJre="${compiler:LINUX_JAVA_VM_TGZ}" manualJreEntry="true" />
+      <jreBundle jreBundleSource="none" includedJre="${compiler:LINUX_X64_JAVA_VM_TGZ}" manualJreEntry="true" />
     </unixInstaller>
   </mediaSets>
   <buildIds>
     <mediaSet refId="743" />
     <mediaSet refId="878" />
+    <mediaSet refId="2796" />
     <mediaSet refId="1595" />
+    <mediaSet refId="2782" />
     <mediaSet refId="1596" />
     <mediaSet refId="2639" />
   </buildIds>
-- 
1.7.10.2