From 9340addc932216a64599577711bc9043b5f039da Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 6 Apr 2005 17:11:08 +0000
Subject: [PATCH] annoation in print version

---
 src/jalview/gui/AlignmentPanel.java |   37 ++++++++++++++++++++++++++++++-----
 1 file changed, 32 insertions(+), 5 deletions(-)

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 04b596a..b3ad3ad 100755
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -203,6 +203,8 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
     scalePanelHolder.setVisible(!wrap);
     hscroll.setVisible(!wrap);
     idwidthAdjuster.setVisible(!wrap);
+
+    av.setShowAnnotation(!wrap);
     annotationScroller.setVisible(!wrap);
     annotationSpaceFillerHolder.setVisible(!wrap);
     idSpaceFillerPanel1.setVisible(!wrap);
@@ -360,10 +362,17 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
     if(overviewPanel!=null)
       overviewPanel.setBoxPosition();
 
-    seqPanel.seqCanvas.fastPaint(av.getStartRes()-oldX, av.getStartSeq()-oldY);
-    idPanel.idCanvas.fastPaint( av.getStartSeq()-oldY );
-    scalePanel.repaint();
-    annotationPanel.fastPaint(av.getStartRes()-oldX);
+    if(av.getWrapAlignment())
+      repaint();
+    else
+    {
+      seqPanel.seqCanvas.fastPaint(av.getStartRes() - oldX,
+                                   av.getStartSeq() - oldY);
+      idPanel.idCanvas.fastPaint(av.getStartSeq() - oldY);
+      scalePanel.repaint();
+      if (av.getShowAnnotation())
+        annotationPanel.fastPaint(av.getStartRes() - oldX);
+    }
 
   }
 
@@ -454,9 +463,17 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
 
     // draw main sequence panel
     pg.translate(idWidth,0);
-    pg.setClip(0,0,pwidth-idWidth, pheight);
     seqPanel.seqCanvas.drawPanel(pg,startRes,endRes,startSeq,endSeq,startRes,startSeq,0);
 
+
+    if(av.getShowAnnotation())
+      {
+        pg.translate(-idWidth,(endSeq-startSeq)*av.charHeight);
+        alabels.drawComponent((Graphics2D)pg);
+        pg.translate(idWidth,0);
+        annotationPanel.drawComponent((Graphics2D) pg, startRes, endRes+1);
+      }
+
     return Printable.PAGE_EXISTS;
   }
 
@@ -530,6 +547,10 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
       height = (av.alignment.getHeight()+1) * av.charHeight + 30;
       width = idPanel.getWidth() + av.alignment.getWidth() * av.charWidth;
     }
+    if(av.getShowAnnotation())
+   {
+     height += annotationPanel.getPreferredSize().height;
+   }
 
     try
     {
@@ -573,7 +594,13 @@ public class AlignmentPanel extends GAlignmentPanel implements AdjustmentListene
         width = idPanel.getWidth() + av.alignment.getWidth() * av.charWidth;
       }
 
+      if(av.getShowAnnotation())
+      {
+        height += annotationPanel.getPreferredSize().height;
+      }
+
 
+System.out.println(width +" "+height);
 
     try
     {
-- 
1.7.10.2