From 93595a2f1d11f5637022563cc475aff7d19eb9db Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Fri, 29 Jun 2012 19:40:11 +0000 Subject: [PATCH] Edited wiki page GSDI through web user interface. --- wiki/GSDI.wiki | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/wiki/GSDI.wiki b/wiki/GSDI.wiki index cf2ec2f..aeadf5d 100644 --- a/wiki/GSDI.wiki +++ b/wiki/GSDI.wiki @@ -32,7 +32,7 @@ Must be in phyloXML format unless option -q is used. Besides the main output of a gene tree with duplications and speciations assigned to all of its internal nodes, this program also produces the following: * a log file, ending in `"_gsdi_log.txt"` * a species tree file which only contains external nodes with were needed for the reconciliation, ending in `"_species_tree_used.xml"` - * if the gene tree contains species with scientific species names such as "Pyrococcus horikoshii strain ATCC 700860" and if a mapping cannot be establish bases on these, GSDI will attempt to map by removing the "strain" (or "subspecies") information, these will be listed in a file ending in `"_gsdi_remapped.txt"`. + * if the gene tree contains species with scientific species names such as "Pyrococcus horikoshii strain ATCC 700860" and if a mapping cannot be establish based on these, GSDI will attempt to map by removing the "strain" (or "subspecies") information, these will be listed in a file ending in `"_gsdi_remapped.txt"`. === Example === `gsdi -g -q gene_tree.xml tree_of_life.nwk out.xml` -- 1.7.10.2