From 94f96a9c993be278b360ad15965715063db72520 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 13 Jun 2005 11:31:48 +0000
Subject: [PATCH] protected now public

---
 src/jalview/jbgui/GAlignFrame.java |   29 +++++++++++++++--------------
 1 file changed, 15 insertions(+), 14 deletions(-)

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 81325d5..ab4bc59 100755
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -46,8 +46,8 @@ public class GAlignFrame extends JInternalFrame {
     protected JMenuItem remove2RightMenuItem = new JMenuItem();
     protected JMenuItem removeGappedColumnMenuItem = new JMenuItem();
     protected JMenuItem removeAllGapsMenuItem = new JMenuItem();
-    protected JCheckBoxMenuItem viewBoxesMenuItem = new JCheckBoxMenuItem();
-    protected JCheckBoxMenuItem viewTextMenuItem = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem viewBoxesMenuItem = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem viewTextMenuItem = new JCheckBoxMenuItem();
     protected JMenuItem sortPairwiseMenuItem = new JMenuItem();
     protected JMenuItem sortIDMenuItem = new JMenuItem();
     protected JMenuItem sortGroupMenuItem = new JMenuItem();
@@ -74,21 +74,21 @@ public class GAlignFrame extends JInternalFrame {
     protected JRadioButtonMenuItem BLOSUM62Colour = new JRadioButtonMenuItem();
     JMenuItem njTreeBlosumMenuItem = new JMenuItem();
     JMenuItem avDistanceTreeBlosumMenuItem = new JMenuItem();
-    protected JCheckBoxMenuItem annotationPanelMenuItem = new JCheckBoxMenuItem();
-    protected JCheckBoxMenuItem colourTextMenuItem = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem annotationPanelMenuItem = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem colourTextMenuItem = new JCheckBoxMenuItem();
     JMenuItem htmlMenuItem = new JMenuItem();
     JMenuItem overviewMenuItem = new JMenuItem();
     protected JMenuItem undoMenuItem = new JMenuItem();
     protected JMenuItem redoMenuItem = new JMenuItem();
-    protected JCheckBoxMenuItem conservationMenuItem = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem conservationMenuItem = new JCheckBoxMenuItem();
     JRadioButtonMenuItem noColourmenuItem = new JRadioButtonMenuItem();
-    protected JCheckBoxMenuItem wrapMenuItem = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem wrapMenuItem = new JCheckBoxMenuItem();
     JMenuItem printMenuItem = new JMenuItem();
-    protected JCheckBoxMenuItem renderGapsMenuItem = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem renderGapsMenuItem = new JCheckBoxMenuItem();
     JMenuItem findMenuItem = new JMenuItem();
     JMenu searchMenu = new JMenu();
-    protected JCheckBoxMenuItem abovePIDThreshold = new JCheckBoxMenuItem();
-    protected JCheckBoxMenuItem sequenceFeatures = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem abovePIDThreshold = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem sequenceFeatures = new JCheckBoxMenuItem();
     protected JRadioButtonMenuItem nucleotideColour = new JRadioButtonMenuItem();
     JMenuItem deleteGroups = new JMenuItem();
     JMenuItem delete = new JMenuItem();
@@ -97,16 +97,16 @@ public class GAlignFrame extends JInternalFrame {
     JMenu jMenu1 = new JMenu();
     JMenuItem pasteNew = new JMenuItem();
     JMenuItem pasteThis = new JMenuItem();
-    protected JCheckBoxMenuItem applyToAllGroups = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem applyToAllGroups = new JCheckBoxMenuItem();
     JMenuItem createPNG = new JMenuItem();
     protected JMenuItem font = new JMenuItem();
-    protected JCheckBoxMenuItem fullSeqId = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem fullSeqId = new JCheckBoxMenuItem();
     JMenuItem epsFile = new JMenuItem();
     JMenuItem LoadtreeMenuItem = new JMenuItem();
     JMenuItem jpred = new JMenuItem();
-    protected JCheckBoxMenuItem scaleAbove = new JCheckBoxMenuItem();
-    protected JCheckBoxMenuItem scaleLeft = new JCheckBoxMenuItem();
-    protected JCheckBoxMenuItem scaleRight = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem scaleAbove = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem scaleLeft = new JCheckBoxMenuItem();
+    public JCheckBoxMenuItem scaleRight = new JCheckBoxMenuItem();
     JMenuItem modifyPID = new JMenuItem();
     JMenuItem modifyConservation = new JMenuItem();
     protected JMenu sortByTreeMenu = new JMenu();
@@ -219,6 +219,7 @@ public class GAlignFrame extends JInternalFrame {
         } catch (Exception e) {
             e.printStackTrace();
         }
+
     }
 
     private void jbInit() throws Exception {
-- 
1.7.10.2