From 9525e1619528f27f004bd6e878890256cac564c0 Mon Sep 17 00:00:00 2001
From: kjvdheide <kjvanderheide@dundee.ac.uk>
Date: Mon, 13 Nov 2017 19:55:14 +0000
Subject: [PATCH] JAL-2805 name changed of interfaces for consistency

---
 src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java                 |    2 +-
 ...adedTreeAssociationI.java => ExternalLoadedTreeAssociationI.java} |    2 +-
 ...alviewTreeViewerBindingI.java => ExternalTreeViewerBindingI.java} |    2 +-
 src/jalview/ext/archaeopteryx/JalviewAptxBinding.java                |    2 +-
 src/jalview/ext/archaeopteryx/JalviewToAptxAssociation.java          |    2 +-
 5 files changed, 5 insertions(+), 5 deletions(-)
 rename src/jalview/ext/archaeopteryx/{JalviewToLoadedTreeAssociationI.java => ExternalLoadedTreeAssociationI.java} (84%)
 rename src/jalview/ext/archaeopteryx/{JalviewTreeViewerBindingI.java => ExternalTreeViewerBindingI.java} (97%)

diff --git a/src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java b/src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java
index bd7de87..f8f1682 100644
--- a/src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java
+++ b/src/jalview/ext/archaeopteryx/ArchaeopteryxInit.java
@@ -81,7 +81,7 @@ public final class ArchaeopteryxInit
     return aptxApp;
   }
 
-  public static JalviewTreeViewerBindingI<?> bindNodesToJalviewSequences(
+  public static ExternalTreeViewerBindingI<?> bindNodesToJalviewSequences(
           final MainFrame aptxApp,
           final AlignmentViewport jalviewAlignViewport,
           final Map<SequenceI, PhylogenyNode> alignMappedToNodes,
diff --git a/src/jalview/ext/archaeopteryx/JalviewToLoadedTreeAssociationI.java b/src/jalview/ext/archaeopteryx/ExternalLoadedTreeAssociationI.java
similarity index 84%
rename from src/jalview/ext/archaeopteryx/JalviewToLoadedTreeAssociationI.java
rename to src/jalview/ext/archaeopteryx/ExternalLoadedTreeAssociationI.java
index ad6a370..9c84527 100644
--- a/src/jalview/ext/archaeopteryx/JalviewToLoadedTreeAssociationI.java
+++ b/src/jalview/ext/archaeopteryx/ExternalLoadedTreeAssociationI.java
@@ -9,7 +9,7 @@ import jalview.datamodel.SequenceI;
  *
  * @param <T>
  */
-interface JalviewToLoadedTreeAssociationI<T>
+interface ExternalLoadedTreeAssociationI<T>
 {
   public void associateLeavesToSequences(SequenceI[] seqs, T tree);
 }
diff --git a/src/jalview/ext/archaeopteryx/JalviewTreeViewerBindingI.java b/src/jalview/ext/archaeopteryx/ExternalTreeViewerBindingI.java
similarity index 97%
rename from src/jalview/ext/archaeopteryx/JalviewTreeViewerBindingI.java
rename to src/jalview/ext/archaeopteryx/ExternalTreeViewerBindingI.java
index f7183af..2bef9d6 100644
--- a/src/jalview/ext/archaeopteryx/JalviewTreeViewerBindingI.java
+++ b/src/jalview/ext/archaeopteryx/ExternalTreeViewerBindingI.java
@@ -35,7 +35,7 @@ import java.awt.event.MouseListener;
  * @author kjvanderheide
  *
  */
-interface JalviewTreeViewerBindingI<N>
+interface ExternalTreeViewerBindingI<N>
         extends ActionListener, MouseListener, SelectionListener,
         SelectionSource
 {
diff --git a/src/jalview/ext/archaeopteryx/JalviewAptxBinding.java b/src/jalview/ext/archaeopteryx/JalviewAptxBinding.java
index 0a444b2..5a49470 100644
--- a/src/jalview/ext/archaeopteryx/JalviewAptxBinding.java
+++ b/src/jalview/ext/archaeopteryx/JalviewAptxBinding.java
@@ -29,7 +29,7 @@ import org.forester.phylogeny.PhylogenyNode;
  *
  */
 public final class JalviewAptxBinding
-        implements JalviewTreeViewerBindingI<PhylogenyNode>
+        implements ExternalTreeViewerBindingI<PhylogenyNode>
 {
   private org.forester.archaeopteryx.TreePanel treeView;
 
diff --git a/src/jalview/ext/archaeopteryx/JalviewToAptxAssociation.java b/src/jalview/ext/archaeopteryx/JalviewToAptxAssociation.java
index 7ee5918..2daa7ce 100644
--- a/src/jalview/ext/archaeopteryx/JalviewToAptxAssociation.java
+++ b/src/jalview/ext/archaeopteryx/JalviewToAptxAssociation.java
@@ -10,7 +10,7 @@ import org.forester.phylogeny.Phylogeny;
 import org.forester.phylogeny.PhylogenyNode;
 
 public class JalviewToAptxAssociation
-        implements JalviewToLoadedTreeAssociationI<Phylogeny>
+        implements ExternalLoadedTreeAssociationI<Phylogeny>
 {
   SequenceI[] alignSequences;
 
-- 
1.7.10.2