From 952ede10e4daf14f554d5867e5eb74591aafddb3 Mon Sep 17 00:00:00 2001 From: jprocter Date: Fri, 18 Nov 2005 13:30:08 +0000 Subject: [PATCH] added 3 letter IUB codes for ambiguous residues/bases --- src/jalview/schemes/ResidueProperties.java | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java index fbaab81..4906eb7 100755 --- a/src/jalview/schemes/ResidueProperties.java +++ b/src/jalview/schemes/ResidueProperties.java @@ -156,9 +156,10 @@ public class ResidueProperties aa3Hash.put("TRP", new Integer(17)); aa3Hash.put("TYR", new Integer(18)); aa3Hash.put("VAL", new Integer(19)); - aa3Hash.put("B", new Integer(20)); - aa3Hash.put("Z", new Integer(21)); - aa3Hash.put("X", new Integer(22)); + // IUB Nomenclature for ambiguous peptides + aa3Hash.put("ASX", new Integer(20)); // "B"; + aa3Hash.put("GLX", new Integer(21)); // X + aa3Hash.put("XAA", new Integer(22));// X unknown aa3Hash.put("-", new Integer(23)); aa3Hash.put("*", new Integer(23)); aa3Hash.put(".", new Integer(23)); -- 1.7.10.2