From 95d5181c5173b5ded7d1ef0da1f8c779409fde6d Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 10 Dec 2004 14:35:18 +0000
Subject: [PATCH] sequence selection modified

---
 src/jalview/gui/IdPanel.java |   23 +++++++++++++++++++++--
 1 file changed, 21 insertions(+), 2 deletions(-)

diff --git a/src/jalview/gui/IdPanel.java b/src/jalview/gui/IdPanel.java
index 4509ab3..14f60d5 100755
--- a/src/jalview/gui/IdPanel.java
+++ b/src/jalview/gui/IdPanel.java
@@ -17,6 +17,7 @@ public class IdPanel extends JPanel implements MouseListener, MouseMotionListene
   public    int            width;
   public    int            lastid;
 
+  SequenceGroup selectedSequenceGroup;
 
   public IdPanel(AlignViewport av, AlignmentPanel parent)
   {
@@ -41,14 +42,29 @@ public class IdPanel extends JPanel implements MouseListener, MouseMotionListene
      for (int i = start; i <= end; i++)
      {
        SequenceI pickedSeq = av.getAlignment().getSequenceAt(i);
-
        if (av.getSelection().contains(pickedSeq))
+       {
          av.getSelection().removeElement(pickedSeq);
-        else
+         selectedSequenceGroup.deleteSequence(pickedSeq);
+       }
+       else
+       {
          av.getSelection().addElement(pickedSeq);
+         if(selectedSequenceGroup==null)
+         {
+           selectedSequenceGroup = new SequenceGroup();
+           av.alignment.addGroup( selectedSequenceGroup );
+           selectedSequenceGroup.setStartRes(0);
+           selectedSequenceGroup.setEndRes( pickedSeq.getSequence().length());
+         }
+
+         selectedSequenceGroup.addSequence( pickedSeq );
+       }
 
      }
 
+     alignPanel.seqPanel.seqCanvas.paintFlag=true;
+     alignPanel.repaint();
      repaint();
 
    }
@@ -117,6 +133,8 @@ public class IdPanel extends JPanel implements MouseListener, MouseMotionListene
       }
       else
       {
+        selectedSequenceGroup =  av.alignment.findGroup(seq);
+
         if (seq != -1)
           selectSeqs(seq,seq);
 
@@ -129,5 +147,6 @@ public class IdPanel extends JPanel implements MouseListener, MouseMotionListene
   {
     lastid = -1;
     PaintRefresher.Refresh(this);
+    selectedSequenceGroup = null;
   }
 }
-- 
1.7.10.2