From 978ff69a2fa5b918f8c39c10c0536f2872c8df27 Mon Sep 17 00:00:00 2001
From: Jim Procter
Date: Tue, 1 May 2018 10:29:19 +0100
Subject: [PATCH] JAL-2944 revised docs and structure chooser screen shots
---
help/html/features/jmol.html | 14 +++-----
help/html/features/schooser_enter-id.png | Bin 29766 -> 23685 bytes
help/html/features/schooser_main.png | Bin 58895 -> 166751 bytes
help/html/features/structurechooser.html | 30 +++++++++-------
help/html/features/viewingpdbs.html | 57 ++++++++++++------------------
5 files changed, 43 insertions(+), 58 deletions(-)
diff --git a/help/html/features/jmol.html b/help/html/features/jmol.html
index 0cd6168..ac2489b 100644
--- a/help/html/features/jmol.html
+++ b/help/html/features/jmol.html
@@ -61,16 +61,10 @@
-->
Superposing structures based on
- their aligned sequences
If several structures are
- available on the alignment, you may add additional structures to an
- existing Jmol view by selecting their entry in the appropriate
- pop-up menu. Jalview will ask you if you wish to add the structure
- to the existing alignment, and if you do, it will import and
- superimpose the new PDB file using the corresponding positions from
- the alignment. If the alignment is subsequently edited, you can use
- the Jmol→Align menu option from
- the menu bar of the structure view window to superpose the
- structures using the updated alignment.
Sequence
+ their aligned sequences
If several structures are shown
+ in a view, you can superimpose them using the corresponding
+ positions from the alignment via the Jmol→Align
+ menu option from the menu bar of the structure view window.
Sequence
based structure superposition was added in Jalview 2.6
diff --git a/help/html/features/schooser_enter-id.png b/help/html/features/schooser_enter-id.png
index f551c500ec9b35a6c7885009da4d8d73bebd556a..4af0d5378fa74fd55dea3c3e52c290f899f29bcc 100644
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