From 99c16c8cf1f3607554c279dd0bc72e62e2ec6946 Mon Sep 17 00:00:00 2001 From: amwaterhouse Date: Thu, 8 Dec 2005 10:58:27 +0000 Subject: [PATCH] new help --- help/html/keys.html | 20 ++++++++ help/html/releases.html | 130 +++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 150 insertions(+) create mode 100755 help/html/keys.html create mode 100755 help/html/releases.html diff --git a/help/html/keys.html b/help/html/keys.html new file mode 100755 index 0000000..83de379 --- /dev/null +++ b/help/html/keys.html @@ -0,0 +1,20 @@ + +Key Strokes + +

Key Strokes

+

Jalview recognises the following keystrokes.

+

Escape - Clears the current selection region, highlighted columns and highlghted + residues

+

Control 'A' - Selects all sequences in the alignment.

+

Control 'C' - Copies the selected region, in Fasta format (Not applet, as no + clipboard is available)

+

Control 'V' - Pastes the selected file (Can be external to Jalview) to a new + alignment window.

+

Control 'X' - Cuts the selected region from the alignment window.

+

Control 'Z' - Undoes the last sequence edit.

+

Control 'F' - Launches the search window.

+

Up Arrow - Moves selected sequence(s) up the alignment

+

Down Arrow - Moves selected sequence(s) down the alignment.

+

 

+ + diff --git a/help/html/releases.html b/help/html/releases.html new file mode 100755 index 0000000..38a5624 --- /dev/null +++ b/help/html/releases.html @@ -0,0 +1,130 @@ + +Release History + +

Release History

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Release
New Features
Issues Resolved
2.07
+ 7/12/05
    +
  • PDB Structure Viewer enhanced
    • +
  • Sequence Feature retrieval and display enhanced
    • +
  • Choose to output sequence start-end after sequence name for file output
    • +
  • Sequence Fetcher WSDBFetch@EBI
    • +
    +
  • HTML output writes groups and features
    • +
  • Group editing is Control and mouse click
    • +
  • Applet can read feature files, PDB files and can be used for HTML + form input
    • +
2.06
+ 28/9/05
    +
  • View annotations in wrapped mode
    • +
  • More options for PCA viewer
    • +
    +
  • GUI bugs resolved
    • +
  • Runs with -nodisplay from command line
    • +
+
2.05b
+ 15/9/05
    +
  • Choose EPS export as lineart or text
    • +
  • Jar files are executable
    • +
  • Can read in Uracil - maps to unknown residue
    • +
    +
  • Known OutOfMemory errors give warning message
    • +
  • Overview window calculated more efficiently
    • +
  • Several GUI bugs resolved
    • +
2.05
+ 30/8/05
    +
  • Edit and annotate in "Wrapped" view
    • +
    +
  • Several GUI bugs resolved
    • +
2.04
+ 24/8/05
    +
  • Hold down mouse wheel & scroll to change font size
    • +
    +
  • Improved JPred client reliability
    • +
  • Improved loading of Jalview files
    • +
2.03
+ 18/8/05
    +
  • Set Proxy server name and port in preferences
    • +
  • Multiple URL links from sequence ids
    • +
  • User Defined Colours can have a scheme name and added to Colour Menu
    • +
  • Choose to ignore gaps in consensus calculation
    • +
  • Unix users can set default web browser
    • +
  • Runs without GUI for batch processing
    • +
  • Dynamically generated Web Service Menus
    • +
    +
  • InstallAnywhere download for Sparc Solaris
    • +
2.02
+ 18/7/05
 
    +
  • Copy & Paste order of sequences maintains alignment order.
    • +
2.01
+ 12/7/05
    +
  • Use delete key for deleting selection.
    • +
  • Use Mouse wheel to scroll sequences.
    • +
  • Help file updated to describe how to add alignment annotations.
    • +
  • Version and build date written to build properties file.
    • +
  • InstallAnywhere installation will check for updates at launch of Jalview.
    • +
    +
  • Delete gaps bug fixed.
    • +
  • FileChooser sorts columns.
    • +
  • Can remove groups one by one.
    • +
  • Filechooser icons installed.
    • +
  • Finder ignores return character when searching. Return key will initiate + a search.
    +
    • +
2.0
+ 20/6/05
    +
  • New codebase
    • +
 
+

 

+ + -- 1.7.10.2