From 9ad4eb52d172607313ea119d7a33992258632b95 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Tue, 12 Nov 2013 00:16:56 +0000 Subject: [PATCH] inprogress --- forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb b/forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb index 8d0a27d..b13581a 100644 --- a/forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb +++ b/forester/ruby/evoruby/exe/run_phylo_pipeline_x.rb @@ -131,10 +131,10 @@ module Evoruby if LAUNCH_ANALYSIS puts "f. analysis:" Dir.chdir "#{hmm_name}/msa/" - run_command "#{PF} -s" + run_command "#{PF} -b=1 -s" Dir.chdir "../.." Dir.chdir "#{hmm_name}/msa100/" - run_command "#{PF} -s" + run_command "#{PF} -b=100 -s" Dir.chdir "../.." puts end -- 1.7.10.2