From 9d5b115c3b60ca2ae4bfb796088d8ca753d46b07 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 25 Jul 2006 15:50:35 +0000
Subject: [PATCH] Odd edit bug with represented seqs fixed

---
 src/jalview/gui/SeqPanel.java |   25 +++++++++++--------------
 1 file changed, 11 insertions(+), 14 deletions(-)

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 9d6b925..9ea087e 100755
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -883,10 +883,17 @@ public class SeqPanel extends JPanel implements MouseListener,
                   return;
                 }
 
+                int alWidth = av.alignment.getWidth();
+                if(av.hasHiddenRows)
+                {
+                  int hwidth = av.alignment.getHiddenSequences().getWidth();
+                  if(hwidth>alWidth)
+                    alWidth = hwidth;
+                }
                 //We can still insert gaps if the selectionGroup
                 //contains all the sequences
                 sg.setEndRes(sg.getEndRes()+startres-lastres);
-                fixedRight = av.alignment.getWidth()+startres-lastres;
+                fixedRight = alWidth+startres-lastres;
               }
               else
               {
@@ -969,19 +976,6 @@ public class SeqPanel extends JPanel implements MouseListener,
             {
               if (fixedColumns && fixedRight != -1)
               {
-                /*if (sg!=null &&
-                    sg.getStartRes() == 0
-                    && sg.getEndRes()  == fixedRight
-                    && !jalview.util.Comparison.isGap(seq.getCharAt(fixedRight)))
-                {
-                  System.out.println("still here");
-                  //Single sequence edit, whole sequence selected,
-                  //extend the selection group
-                  sg.setEndRes(av.alignment.getWidth() -1 + startres - lastres);
-                  fixedColumns = false;
-                  insertChar(j, seq);
-                }
-                else*/
                   insertChar(j, seq, fixedRight);
               }
               else
@@ -1038,6 +1032,9 @@ public class SeqPanel extends JPanel implements MouseListener,
 
       if (blankColumn <= j)
       {
+        System.out.println("END HERE "+seq.getName()+" "+seq.getLength()+" "+j+" "
+            +blankColumn+" "+fixedColumn);
+        blankColumn = fixedColumn;
         endEditing();
         return;
       }
-- 
1.7.10.2