From 9e95025ca7a686639c1acdc630db8edde72ffc61 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 21 Aug 2017 14:22:52 +0100
Subject: [PATCH] =?utf8?q?JAL-2588=20don=E2=80=99t=20test=20char=3D=3Dgap=20?=
 =?utf8?q?until=20we=20know=20the=20shader=20won=E2=80=99t=20colour=20gaps=20?=
 =?utf8?q?itself?=
MIME-Version: 1.0
Content-Type: text/plain; charset=utf8
Content-Transfer-Encoding: 8bit

---
 .ant-targets-build.xml                            |   31 +++++++++++++++++++++
 src/jalview/renderer/OverviewResColourFinder.java |    4 +--
 2 files changed, 33 insertions(+), 2 deletions(-)
 create mode 100644 .ant-targets-build.xml

diff --git a/.ant-targets-build.xml b/.ant-targets-build.xml
new file mode 100644
index 0000000..15432a1
--- /dev/null
+++ b/.ant-targets-build.xml
@@ -0,0 +1,31 @@
+build
+buildPropertiesFile
+buildTests
+buildextclients
+buildindices
+castorbinding
+clean
+compileApplet
+distclean
+help
+init
+linkcheck
+makeApplet
+makedist
+makefulldist
+obfuscate
+packageApplet
+prepare
+prepareTests
+preparejnlp
+prepubapplet_1
+pubapplet
+runenv
+signApplet
+sourcedist
+sourcedoc
+sourcescrub
+testclean
+testng
+usage
+writejnlpf
diff --git a/src/jalview/renderer/OverviewResColourFinder.java b/src/jalview/renderer/OverviewResColourFinder.java
index ec638a7..c591f54 100644
--- a/src/jalview/renderer/OverviewResColourFinder.java
+++ b/src/jalview/renderer/OverviewResColourFinder.java
@@ -41,8 +41,8 @@ public class OverviewResColourFinder extends ResidueColourFinder
     // settings
     if (shader.getColourScheme() != null)
     {
-      if (Comparison.isGap(currentChar)
-              && !shader.getColourScheme().hasGapColour())
+      if (!shader.getColourScheme().hasGapColour()
+              && Comparison.isGap(currentChar))
       {
         resBoxColour = GAP_COLOUR;
       }
-- 
1.7.10.2