From 9eace25dceb7681fef7a9b414318450e66baf2f4 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 21 Mar 2005 18:46:44 +0000
Subject: [PATCH] add outline colour

---
 src/jalview/gui/PopupMenu.java |   41 +++++++++++++++++++++++++++++++++++++++-
 1 file changed, 40 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/PopupMenu.java b/src/jalview/gui/PopupMenu.java
index abd5093..166ab73 100755
--- a/src/jalview/gui/PopupMenu.java
+++ b/src/jalview/gui/PopupMenu.java
@@ -3,6 +3,7 @@ package jalview.gui;
 import jalview.datamodel.*;
 import jalview.analysis.*;
 import jalview.schemes.*;
+import java.awt.*;
 import javax.swing.*;
 import java.awt.event.*;
 import jalview.io.*;
@@ -40,6 +41,7 @@ public class PopupMenu extends JPopupMenu
   Sequence sequence;
   JMenuItem unGroupMenuItem = new JMenuItem();
   JMenuItem pdbMenuItem = new JMenuItem();
+  JMenuItem outline = new JMenuItem();
 
   public PopupMenu(AlignmentPanel ap, Sequence seq)
   {
@@ -133,6 +135,7 @@ public class PopupMenu extends JPopupMenu
         groupName_actionPerformed(e);
       }
     });
+    groupAnnotation.setEnabled(false);
     groupAnnotation.setText("Annotation");
     groupAnnotation.addActionListener(new java.awt.event.ActionListener()
     {
@@ -151,6 +154,8 @@ public class PopupMenu extends JPopupMenu
       }
     });
     residueMenu.setText("Residue");
+    annotateResidue.setEnabled(false);
+    annotateResidue.setActionCommand("annotate residue");
     annotateResidue.setText("annotate residue???");
     PIDColour.setFocusPainted(false);
     unGroupMenuItem.setText("Remove Group");
@@ -169,6 +174,14 @@ public class PopupMenu extends JPopupMenu
         pdbMenuItem_actionPerformed(e);
       }
     });
+    outline.setText("Border colour");
+    outline.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        outline_actionPerformed(e);
+      }
+    });
     add(groupMenu);
     this.add(sequenceMenu);
     this.add(residueMenu);
@@ -179,6 +192,8 @@ public class PopupMenu extends JPopupMenu
     defineMenu.add(groupName);
     defineMenu.add(groupAnnotation);
     defineMenu.addSeparator();
+    defineMenu.add(outline);
+    defineMenu.addSeparator();
     defineMenu.add(noColourmenuItem);
     defineMenu.add(clustalColour);
     defineMenu.add(zappoColour);
@@ -381,7 +396,23 @@ public class PopupMenu extends JPopupMenu
 
   protected void abovePIDColour_actionPerformed(ActionEvent e)
   {
-    Desktop.setPIDSliderSource(ap, getGroup().cs, getGroup().getName());
+    if(abovePIDColour.isSelected())
+{
+
+   Desktop.setPIDSliderSource(ap, getGroup().cs, getGroup().getName());
+   refresh();
+}
+else // remove PIDColouring
+{
+    ColourSchemeI cs = getGroup().cs;
+      ResidueColourScheme rcs = (ResidueColourScheme)cs;
+      rcs.setThreshold(0);
+      getGroup().cs = rcs;
+      refresh();
+}
+
+
+
   }
 
 
@@ -550,4 +581,12 @@ public class PopupMenu extends JPopupMenu
     }
   }
 
+  protected void outline_actionPerformed(ActionEvent e)
+  {
+    SequenceGroup sg = getGroup();
+    Color col = JColorChooser.showDialog(this, "Select Outline Colour", Color.BLUE);
+    if(col!=null)
+      sg.setOutlineColour(col);
+  }
+
 }
-- 
1.7.10.2