From a0559d1b4aa6c156f413cde0e7ae5c877cb3cbdb Mon Sep 17 00:00:00 2001 From: gmungoc Date: Tue, 8 Nov 2016 15:47:30 +0000 Subject: [PATCH] JAL-2301 made T hydrophobic as per the cited conservation method --- src/jalview/schemes/ResidueProperties.java | 2 +- test/jalview/schemes/ResiduePropertiesTest.java | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java index f855fde..4d46279 100755 --- a/src/jalview/schemes/ResidueProperties.java +++ b/src/jalview/schemes/ResidueProperties.java @@ -935,7 +935,7 @@ public class ResidueProperties hydrophobic.put("D", ZERO); hydrophobic.put("N", ZERO); hydrophobic.put("S", ZERO); - hydrophobic.put("T", ZERO); + hydrophobic.put("T", ONE); hydrophobic.put("P", ZERO); } diff --git a/test/jalview/schemes/ResiduePropertiesTest.java b/test/jalview/schemes/ResiduePropertiesTest.java index 41d7448..be6a10c 100644 --- a/test/jalview/schemes/ResiduePropertiesTest.java +++ b/test/jalview/schemes/ResiduePropertiesTest.java @@ -1570,7 +1570,7 @@ public class ResiduePropertiesTest checkProperty("polar", "YWHRKTSNDEQ-*X"); checkProperty("positive", "HKR-*"); checkProperty("proline", "P-*"); - checkProperty("hydrophobic", "MILVFYWHKCGAC-*X"); + checkProperty("hydrophobic", "MILVFYWHKTGAC-*X"); } /** -- 1.7.10.2