From a181d953c856f070b327014888971670e2662ec1 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 28 Sep 2017 13:12:28 +0100
Subject: [PATCH] JAL-2036 set menus after fully loading AlignFrame

---
 src/jalview/gui/Jalview2XML.java |    1 +
 1 file changed, 1 insertion(+)

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 1658f0f88..b357234 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -2295,6 +2295,7 @@ public class Jalview2XML
 
       jarInputStreamProvider jprovider = createjarInputStreamProvider(file);
       af = loadJalviewAlign(jprovider);
+      af.setMenusForViewport();
 
     } catch (MalformedURLException e)
     {
-- 
1.7.10.2