From a2207bf3ccb22ccd26719724bb9de964ddf24dce Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Mon, 17 Jun 2013 10:31:58 +0100
Subject: [PATCH] JAL-966 avoid using java.util.Vector

---
 src/jalview/analysis/Dna.java |    5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/src/jalview/analysis/Dna.java b/src/jalview/analysis/Dna.java
index a3a0fe1..f0041f6 100644
--- a/src/jalview/analysis/Dna.java
+++ b/src/jalview/analysis/Dna.java
@@ -17,6 +17,7 @@
  */
 package jalview.analysis;
 
+import java.util.ArrayList;
 import java.util.Hashtable;
 import java.util.Vector;
 
@@ -423,7 +424,7 @@ public class Dna
           String seqstring, int[] viscontigs, AlignedCodonFrame codons,
           char gapCharacter, DBRefEntry product)
   {
-    Vector skip = new Vector();
+    java.util.List skip = new ArrayList();
     int skipint[] = null;
     ShiftList vismapping = new ShiftList(); // map from viscontigs to seqstring
     // intervals
@@ -499,7 +500,7 @@ public class Dna
                 }
               }
             }
-            skip.addElement(skipint);
+            skip.add(skipint);
             skipint = null;
           }
           if (aa.equals("STOP"))
-- 
1.7.10.2