From a27c9cd7bb55d83399dff356a1c324868551dcc2 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Tue, 10 Nov 2015 15:00:47 +0000 Subject: [PATCH] JAL-653 added missing pragma string to processing filter --- src/jalview/io/FeaturesFile.java | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java index c6bc1dd..a670e6e 100755 --- a/src/jalview/io/FeaturesFile.java +++ b/src/jalview/io/FeaturesFile.java @@ -705,6 +705,7 @@ public class FeaturesFile extends AlignFile static { GFFPRAGMA = new HashMap(); + GFFPRAGMA.put("gff-version", GffPragmas.gff_version); GFFPRAGMA.put("sequence-region", GffPragmas.sequence_region); GFFPRAGMA.put("feature-ontology", GffPragmas.feature_ontology); GFFPRAGMA.put("#", GffPragmas.hash); @@ -1510,6 +1511,7 @@ public class FeaturesFile extends AlignFile /** * this is only for the benefit of object polymorphism - method does nothing. */ + @Override public void parse() { // IGNORED @@ -1520,6 +1522,7 @@ public class FeaturesFile extends AlignFile * * @return error message */ + @Override public String print() { return "USE printGFFFormat() or printJalviewFormat()"; -- 1.7.10.2