From a2f6cd5b735ce1a8adf4dd5cd4d71b6d0a477587 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Mon, 16 Oct 2017 14:35:17 +0100 Subject: [PATCH] JAL-2481 patch to fix findFeatureColour for end-of-sequence test --- src/jalview/renderer/seqfeatures/FeatureRenderer.java | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/jalview/renderer/seqfeatures/FeatureRenderer.java b/src/jalview/renderer/seqfeatures/FeatureRenderer.java index f16522f..1f47da3 100644 --- a/src/jalview/renderer/seqfeatures/FeatureRenderer.java +++ b/src/jalview/renderer/seqfeatures/FeatureRenderer.java @@ -216,7 +216,8 @@ public class FeatureRenderer extends FeatureRendererModel return null; } - if (Comparison.isGap(seq.getCharAt(column))) + // column is 'base 1' but getCharAt is an array index (ie from 0) + if (Comparison.isGap(seq.getCharAt(column - 1))) { /* * returning null allows the colour scheme to provide gap colour -- 1.7.10.2