From a4660272db3bf9d41ec4c3a8bbdb584c89df1610 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Wed, 5 Sep 2012 01:59:12 +0000 Subject: [PATCH] in progress --- .../_aptx_configuration_file | 40 +------------------- 1 file changed, 2 insertions(+), 38 deletions(-) diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file b/forester/aptx/aptx_configuration_files/_aptx_configuration_file index b858bf0..937f8fd 100644 --- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file +++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file @@ -126,7 +126,7 @@ allow_editing: yes internal_labels_are_confidence_values: no replace_underscores_in_nh_parsing: no extract_taxonomy_codes_in_nh_parsing: yes -ext_descendents_data_to_return: sequence_mol_seq +ext_descendents_data_to_return: sequence_name # phyloXML parsing @@ -419,43 +419,7 @@ domain_color: PAAD_DAPIN 0x9999CC domain_color: NB-ARC 0x500050 domain_color: WD40 0x888888 domain_color: RVT_1 0x999900 -domain_color: NOPS 0x505000 -domain_color: RRM_1 0x004400 -domain_color: fn3 0xFFCC00 -domain_color: Ank 0xCC33FF -domain_color: Pkinase 0x339900 -domain_color: Pkinase_Tyr 0x336600 -domain_color: ig 0x660066 -domain_color: zf-C3HC4 0x6699FF -domain_color: zf-CCHC 0x6699EE -domain_color: zf-C2H2 0x6699CC -domain_color: zf-B_box 0x6699DD -domain_color: PDZ 0x66FFCC -domain_color: SH3_2 0x996600 -domain_color: MIRO 0xCCFF00 -domain_color: Myb_DNA-binding 0xDDDDDD -domain_color: NHL 0x336666 -domain_color: PKD_channel 0x336666 -domain_color: Ion_trans 0x996666 -domain_color: CAP_GLY 0xCC9900 -domain_color: LRR_1 0xFFFF99 -domain_color: LRR_2 0xFFFF66 -domain_color: LRR_3 0xFFFF33 -domain_color: LRR_adjacent 0xFFFF00 -domain_color: LRRCT 0xFFCC99 -domain_color: LRRNT 0xFFCC66 -domain_color: LRRNT_2 0xFFCC33 -domain_color: Ank 0x990099 -domain_color: Sushi 0x004400 -domain_color: ZU5 0xFF9999 -domain_color: V-set 0x3399FF -domain_color: TPR_1 0xFF1493 -domain_color: TPR_2 0xFF69B4 -domain_color: TPR_3 0xCD6090 -domain_color: TPR_4 0xFF6A6A -domain_color: TPR_MLP1_2 0x33FF00 -domain_color: Collagen 0xFF7F00 -domain_color: MIF 0xADD8E6 + # Annotation colors -- 1.7.10.2