From a53d1197abfc832020cefd499d3b08188d04bafb Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 21 Mar 2005 18:45:56 +0000
Subject: [PATCH] maintain slider values when click on a group

---
 src/jalview/gui/Desktop.java |   18 +++++++++++-------
 1 file changed, 11 insertions(+), 7 deletions(-)

diff --git a/src/jalview/gui/Desktop.java b/src/jalview/gui/Desktop.java
index fe25cd4..8928acc 100755
--- a/src/jalview/gui/Desktop.java
+++ b/src/jalview/gui/Desktop.java
@@ -42,7 +42,6 @@ public class Desktop extends jalview.jbgui.GDesktop
 
     setTitle("Jalview 2005");
     setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
-    setVisible(true);
     desktop = new JDesktopPane();
     desktop.setBackground(Color.white);
     setContentPane(desktop);
@@ -77,6 +76,7 @@ public void windowClosing(WindowEvent evt)
  jalview.bin.Cache.setProperty("SCREEN_HEIGHT", getHeight() + "");
 }
 });
+      setVisible(true);
 
 /////////Add a splashscreen on startup
 
@@ -87,7 +87,7 @@ public void windowClosing(WindowEvent evt)
     SplashScreen splash = new SplashScreen(frame, image);
     frame.setContentPane(splash);
     desktop.add(frame);
-    frame.setVisible(true);
+
     openFrameCount++;
     try
     {
@@ -102,13 +102,13 @@ public void windowClosing(WindowEvent evt)
     frame.setIconifiable(false);
     frame.setMaximizable(false);
     frame.setFrameIcon(null);
+    frame.setVisible(true);
 
   }
 
   public static void addInternalFrame(final JInternalFrame frame, String title, int w, int h)
   {
    desktop.add(frame);
-   frame.setVisible(true);
    openFrameCount++;
    try {
        frame.setSelected(true);
@@ -140,6 +140,7 @@ public void windowClosing(WindowEvent evt)
       }
     });
 
+   frame.setVisible(true);
    windowMenu.add(menuItem);
  }
 
@@ -175,7 +176,6 @@ public void windowClosing(WindowEvent evt)
      addInternalFrame(af, file, 700, 500);
      af.statusBar.setText("Successfully loaded file " + file);
 
-
    }
    else
      JOptionPane.showInternalMessageDialog(Desktop.desktop,  "Couldn't open file.\n"
@@ -291,14 +291,16 @@ public void windowClosing(WindowEvent evt)
  public static int setConservationSliderSource(AlignmentPanel ap, ColourSchemeI cs, String source)
  {
    SliderPanel sp = null;
+   ConservationColourScheme ccs = (ConservationColourScheme)cs;
+   int value = ccs.inc;
 
    if(conservationSlider == null)
    {
-     sp = new SliderPanel(ap, 30, true, cs);
+     sp = new SliderPanel(ap, value, true, cs);
      conservationSlider = new JInternalFrame();
      conservationSlider.setContentPane(sp);
-     conservationSlider.setResizable(false);
      addInternalFrame(conservationSlider, "Conservation Colour Increment  ("+source+")", 420, 90);
+     conservationSlider.setResizable(false);
      conservationSlider.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
                   {
                     public void internalFrameClosed(javax.swing.event.InternalFrameEvent e)
@@ -309,9 +311,11 @@ public void windowClosing(WindowEvent evt)
    }
    else
    {
+
        conservationSlider.setTitle("Conservation Colour Increment  ("+source+")");
        sp = (SliderPanel)conservationSlider.getContentPane();
        sp.cs = cs;
+       sp.setValue(value);
    }
 
    if(ap.av.alignment.getGroups()!=null)
@@ -348,8 +352,8 @@ public void windowClosing(WindowEvent evt)
      pid = new SliderPanel(ap, 50, false, cs);
      PIDSlider = new JInternalFrame();
      PIDSlider.setContentPane(pid);
-     PIDSlider.setResizable(false);
      addInternalFrame(PIDSlider, "Percentage Identity Threshold ("+source+")", 420, 90);
+     PIDSlider.setResizable(false);
    }
    else
    {
-- 
1.7.10.2