From a61c539e59b4e18c80d85f6e88f13b1d45d880cf Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Thu, 6 Dec 2012 01:48:05 +0000 Subject: [PATCH] work on taxonomy extraction for applets for aLeaves MAFFT suite --- forester/aptx/aptx_example_files/species_extraction_pfam.nh | 1 + forester/aptx/aptx_example_files/species_extraction_yes.nh | 1 + 2 files changed, 2 insertions(+) create mode 100644 forester/aptx/aptx_example_files/species_extraction_pfam.nh create mode 100644 forester/aptx/aptx_example_files/species_extraction_yes.nh diff --git a/forester/aptx/aptx_example_files/species_extraction_pfam.nh b/forester/aptx/aptx_example_files/species_extraction_pfam.nh new file mode 100644 index 0000000..634c440 --- /dev/null +++ b/forester/aptx/aptx_example_files/species_extraction_pfam.nh @@ -0,0 +1 @@ +((((FIBG_PETMA/26-172:1.695770,O93568_CHICK/29-173:0.257320):0.396670,(A8E5P0_DANRE/26-168:0.145640,Q4SRZ7_PEA/25-167:0.547700)1.000:0.792700):0.000140,(FIBG_HUMAN/29-173:0.078620,(FIBG_RAT/29-173:0.149570,FIBG_BOVIN/27-171:0.244750)0.847:0.044440)0.891:0.179090):0.045500,FIBG_PIG/27-170:0.739450); diff --git a/forester/aptx/aptx_example_files/species_extraction_yes.nh b/forester/aptx/aptx_example_files/species_extraction_yes.nh new file mode 100644 index 0000000..19d5623 --- /dev/null +++ b/forester/aptx/aptx_example_files/species_extraction_yes.nh @@ -0,0 +1 @@ +((((FIBG_PETMA:1.695770,O93568_CHICK-Gallus_gallus:0.257320):0.396670,(A8E5P0_DANRE|26-168:0.145640,Q4SRZ7_PEA_same:0.547700)1.000:0.792700):0.000140,(FIBG_HUMAN-homo-sapiens:0.078620,(FIBG_RAT:0.149570,FIBG_BOVIN:0.244750)0.847:0.044440)0.891:0.179090):0.045500,FIBG_PIG:0.739450); -- 1.7.10.2