From a68a0c7648ce58397a503f999cc2eef6215ca3e8 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Mon, 16 Mar 2020 17:42:45 +0000 Subject: [PATCH] =?utf8?q?JAL-3407=20JAL-3549=20explicitly=20mention=20the=20?= =?utf8?q?=E2=80=98no=20features=E2=80=99=20dialog,=20and=20how=20an=20exist?= =?utf8?q?ing=20selection=20affects=20the=20sort=20alignment=20by=20feature=20?= =?utf8?q?score/density?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- help/help/html/features/featuresettings.html | 17 ++++++++++++----- 1 file changed, 12 insertions(+), 5 deletions(-) diff --git a/help/help/html/features/featuresettings.html b/help/help/html/features/featuresettings.html index 555e2ba..ad6627b 100755 --- a/help/help/html/features/featuresettings.html +++ b/help/help/html/features/featuresettings.html @@ -123,11 +123,18 @@

Ordering alignment by - features

The 'Seq Sort by Score' and 'Seq Sort by - Density' buttons will sort the alignment based on the average score - or total number of currently active features and groups on each - sequence. To order the alignment using a specific feature type, use - the sort by .. entries in the pop-up menu for that type.
+ features +

+

+ The 'Seq Sort by Score' and 'Seq Sort by Density' buttons will sort + the alignment based on the average score or total number of + currently active features and groups on each sequence. A dialog box + is shown if there are no features to use for sorting sequences. To + order the alignment using a specific feature type, use the + sort by .. entries in the pop-up menu for that type.

When + a selected region exists, only features lying within the columns + containing the selected region will be considered, but all sequences + (including those not selected) will be reordered. Feature sorting and graduated feature colouring were introduced in Jalview 2.5

-- 1.7.10.2