From a7a95ccfd3f0b5cd94e477ba37b9011d7ce84aee Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Thu, 9 Dec 2010 16:35:01 +0000
Subject: [PATCH] java 1.1 patches

---
 src/jalview/datamodel/AlignmentView.java |   10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java
index 0b4e236..325fc45 100644
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -115,7 +115,13 @@ public class AlignmentView
     }
 
     // get the alignment's group list and make a copy
-    Vector grps = new Vector(alignment.getGroups());
+    Vector grps = new Vector();
+    Vector gg = alignment.getGroups();
+    Enumeration gge = gg.elements();
+    while (gge.hasMoreElements())
+    {
+      grps.addElement(gge.nextElement());
+    }
     ScGroup[] sgrps = null;
     boolean addedgps[] = null;
     if (grps != null)
@@ -177,7 +183,7 @@ public class AlignmentView
         {
           for (int sg = 0; sg < sgrps.length; sg++)
           {
-            if (((Vector) grps.get(sg)).contains(selseqs[i]))
+            if (((Vector) grps.elementAt(sg)).contains(selseqs[i]))
             {
               sequences[csi].setGroupMembership(sgrps[sg]);
               sgrps[sg].sg.deleteSequence(selseqs[i], false);
-- 
1.7.10.2