From a7bec763a3e4f17a549115f8f9f19ee4c742c26b Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 14 Dec 2006 18:58:14 +0000
Subject: [PATCH] Watch out for - symbol lin jnet files

---
 src/jalview/datamodel/AlignmentAnnotation.java |    3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 7c57e6b..d6eb3ea 100755
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -121,7 +121,8 @@ public class AlignmentAnnotation
         }
 
         if (annotations[i].secondaryStructure != 'H'
-            && annotations[i].secondaryStructure != 'E')
+            && annotations[i].secondaryStructure != 'E'
+            && annotations[i].secondaryStructure != '-')
         {
           nonSSLabel = true;
         }
-- 
1.7.10.2