From a8a3ca19aa9240b9d816ed9e7dc8be45209989ae Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Wed, 29 Aug 2007 12:39:25 +0000
Subject: [PATCH] applet and application menu entry differences and consensus
only differences
---
help/html/menus/alwannotations.html | 16 ++++++++++++----
1 file changed, 12 insertions(+), 4 deletions(-)
diff --git a/help/html/menus/alwannotations.html b/help/html/menus/alwannotations.html
index 546a94a..7b9b0d5 100755
--- a/help/html/menus/alwannotations.html
+++ b/help/html/menus/alwannotations.html
@@ -19,10 +19,18 @@
<em>Deletes the annotation row whose label was clicked in order to bring
up the menu.</em> </li>
<li><strong>Show All Hidden Rows</strong><br>
- <em>Shows all hidden annotation rows.</em> </li>
- <li><strong>Export Annotation</strong><br>
- <em>Annotations can be saved to file or output to a text window in the
- Jalview annotations format. </em> </li>
+ <em>Shows all hidden annotation rows.</em> </li>
+ <li><strong>Export Annotation</strong> <em>(Application only)</em><br>
+ <em>Annotations can be saved to file or output to a text window in the
+ Jalview annotations format. </em> </li>
+ <li><strong>Show Values in Text Box</strong> <em>(applet only)</em><br>
+ <em>Opens a text box with a list of comma-separated values corresponding
+ to the annotation (numerical or otherwise) at each position in the row.
+ This is useful to export alignment quality measurements for further analysis.</em>
+ </li>
+ </ul>
+ <em>The following additional entries are avalable when the popup menu is opened on a consensus sequence annotation row:</em>
+ <ul>
<li><strong>Ignore Gaps in Consensus</strong><br>
If this checkbox is selected, all consensus calculations performed in
the current Alignment window will be done without counting gaps as a consensus
--
1.7.10.2