From a91cc0e3a2cf93012e12b30f6716a0ec3f64f74d Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Thu, 20 Dec 2012 01:17:02 +0000 Subject: [PATCH] Edited wiki page RIO through web user interface. --- wiki/RIO.wiki | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/wiki/RIO.wiki b/wiki/RIO.wiki index eb368e6..acc4a22 100644 --- a/wiki/RIO.wiki +++ b/wiki/RIO.wiki @@ -13,8 +13,8 @@ java -Xmx2048m -cp forester.jar org.forester.application.rio [options] ` : first gene tree to analyze (0-based index) - * `-l=` : last gene tree to analyze (0-based index) + * `-f=` : first gene tree to analyze (0-based index) (default: analyze all gene trees) + * `-l=` : last gene tree to analyze (0-based index) (default: analyze all gene trees) * `-r=` : re-rooting method for gene trees, possible values or 'none', 'midpoint', or 'outgroup' (default: by minizming duplications) * `-o=` : for rooting by outgroup, name of outgroup (external gene tree node) * `-b` : to use SDIR instead of GSDIR (faster, but non-binary species trees are disallowed) -- 1.7.10.2