From aac9e5a2d05c6947c237f84a3a4b9dcdf956ceec Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 4 Apr 2019 20:45:19 +0100
Subject: [PATCH] JAL-3220 j2sIgnore on 3 more main methods

---
 src/jalview/io/JPredFile.java                      |    3 +--
 src/jalview/util/AWTConsole.java                   |   25 ++++++++++++++++----
 .../jmol/JmolVsJalviewPDBParserEndToEndTest.java   |    7 +++++-
 3 files changed, 28 insertions(+), 7 deletions(-)

diff --git a/src/jalview/io/JPredFile.java b/src/jalview/io/JPredFile.java
index a944f38..e375df7 100755
--- a/src/jalview/io/JPredFile.java
+++ b/src/jalview/io/JPredFile.java
@@ -363,10 +363,9 @@ public class JPredFile extends AlignFile
   }
 
   /**
-   * DOCUMENT ME!
    * 
    * @param args
-   *          DOCUMENT ME!
+   * @j2sIgnore
    */
   public static void main(String[] args)
   {
diff --git a/src/jalview/util/AWTConsole.java b/src/jalview/util/AWTConsole.java
index 6698414..9286794 100644
--- a/src/jalview/util/AWTConsole.java
+++ b/src/jalview/util/AWTConsole.java
@@ -72,10 +72,10 @@ public class AWTConsole extends WindowAdapter
     // create all components and add them
     frame = new Frame("Java Console");
     Dimension screenSize = Toolkit.getDefaultToolkit().getScreenSize();
-    Dimension frameSize = new Dimension((int) (screenSize.width / 2),
-            (int) (screenSize.height / 2));
-    int x = (int) (frameSize.width / 2);
-    int y = (int) (frameSize.height / 2);
+    Dimension frameSize = new Dimension(screenSize.width / 2,
+            screenSize.height / 2);
+    int x = frameSize.width / 2;
+    int y = frameSize.height / 2;
     frame.setBounds(x, y, frameSize.width, frameSize.height);
 
     textArea = new TextArea();
@@ -142,7 +142,9 @@ public class AWTConsole extends WindowAdapter
             .getLocalGraphicsEnvironment();
     String[] fontNames = ge.getAvailableFontFamilyNames();
     for (int n = 0; n < fontNames.length; n++)
+    {
       System.out.println(fontNames[n]);
+    }
     // Testing part: simple an error thrown anywhere in this JVM will be printed
     // on the Console
     // We do it with a seperate Thread becasue we don't wan't to break a Thread
@@ -153,6 +155,7 @@ public class AWTConsole extends WindowAdapter
     errorThrower.start();
   }
 
+  @Override
   public synchronized void windowClosed(WindowEvent evt)
   {
     quit = true;
@@ -174,17 +177,20 @@ public class AWTConsole extends WindowAdapter
     System.exit(0);
   }
 
+  @Override
   public synchronized void windowClosing(WindowEvent evt)
   {
     frame.setVisible(false); // default behaviour of JFrame
     frame.dispose();
   }
 
+  @Override
   public synchronized void actionPerformed(ActionEvent evt)
   {
     textArea.setText("");
   }
 
+  @Override
   public synchronized void run()
   {
     try
@@ -203,7 +209,9 @@ public class AWTConsole extends WindowAdapter
           textArea.append(input);
         }
         if (quit)
+        {
           return;
+        }
       }
 
       while (Thread.currentThread() == reader2)
@@ -220,7 +228,9 @@ public class AWTConsole extends WindowAdapter
           textArea.append(input);
         }
         if (quit)
+        {
           return;
+        }
       }
     } catch (Exception e)
     {
@@ -251,7 +261,9 @@ public class AWTConsole extends WindowAdapter
     {
       int available = in.available();
       if (available == 0)
+      {
         break;
+      }
       byte b[] = new byte[available];
       in.read(b);
       input = input + new String(b, 0, b.length);
@@ -259,6 +271,11 @@ public class AWTConsole extends WindowAdapter
     return input;
   }
 
+  /**
+   * 
+   * @param arg
+   * @j2sIgnore
+   */
   public static void main(String[] arg)
   {
     new AWTConsole(); // create console with not reference
diff --git a/test/jalview/ext/jmol/JmolVsJalviewPDBParserEndToEndTest.java b/test/jalview/ext/jmol/JmolVsJalviewPDBParserEndToEndTest.java
index 4c6fe44..382e208 100644
--- a/test/jalview/ext/jmol/JmolVsJalviewPDBParserEndToEndTest.java
+++ b/test/jalview/ext/jmol/JmolVsJalviewPDBParserEndToEndTest.java
@@ -53,6 +53,11 @@ public class JmolVsJalviewPDBParserEndToEndTest
     JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
   }
 
+  /**
+   * 
+   * @param args
+   * @j2sIgnore
+   */
   public static void main(String[] args)
   {
     if (args == null || args[0] == null)
@@ -72,7 +77,7 @@ public class JmolVsJalviewPDBParserEndToEndTest
 
   public static void testFileParser(String testDir, String[] testFiles)
   {
-    Set<String> failedFiles = new HashSet<String>();
+    Set<String> failedFiles = new HashSet<>();
     int totalSeqScanned = 0, totalFail = 0;
     for (String pdbStr : testFiles)
     {
-- 
1.7.10.2