From abef4519cb76e4ae3632ef31f09ce001cb7769c7 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@dundee.ac.uk>
Date: Fri, 18 Apr 2014 16:22:38 +0100
Subject: [PATCH] fix for JAL-1478

---
 src/jalview/io/AnnotationFile.java |    1 +
 1 file changed, 1 insertion(+)

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index 6f24361..5979a27 100755
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -791,6 +791,7 @@ public class AnnotationFile
         else if (token.equalsIgnoreCase("SEQUENCE_GROUP"))
         {
           addGroup(al, st);
+          modified=true;
           continue;
         }
 
-- 
1.7.10.2